DZone
Java Zone
Thanks for visiting DZone today,
Edit Profile
  • Manage Email Subscriptions
  • How to Post to DZone
  • Article Submission Guidelines
Sign Out View Profile
  • Post an Article
  • Manage My Drafts
Over 2 million developers have joined DZone.
Log In / Join
  • Refcardz
  • Trend Reports
  • Webinars
  • Zones
  • |
    • Agile
    • AI
    • Big Data
    • Cloud
    • Database
    • DevOps
    • Integration
    • IoT
    • Java
    • Microservices
    • Open Source
    • Performance
    • Security
    • Web Dev
DZone > Java Zone > Bio4j Go Tools

Bio4j Go Tools

Pablo Pareja Tobes user avatar by
Pablo Pareja Tobes
·
Dec. 01, 11 · Java Zone · Interview
Like (0)
Save
Tweet
5.56K Views

Join the DZone community and get the full member experience.

Join For Free

UPDATE: This post is from March 2011 so if you are interested in this tool please check all the features and functionality that have been added from that time till now listed here:

- Bio4j GO Tools goes web (April 2011)

- GO Annotation graph visualizations with Bio4j Go Tools + Gephi Toolkit + SiGMa project (April 2011)

- Improvements in Bio4j Go Tools (Graph visualization) (June 2011)

- Cool GO annotation visualizations with Gephi + Bio4j (November 2011)

Now the original post:

As you may have seen Bio4j has already started making his way through the bioinformatics world; however there’s not as much information as there should be about the project yet.

That’s where Bio4j Go Tools comes in as the first real-world example using Bio4j as back-end.

Bio4j Go Tools is a group of Gene Ontology related services and apps. (You can find more information about this in the wiki)

The services provided so far are:
- Uniprot protein GO annotations retrieving
- GoSlim requests with custom Slim term sets.

Both services results and client-server communication are XML based following a really simple and intuitive structure.

A user-friendly AIR application has been developed allowing the user to directly use these services abstracting the logic of the different requests.

Bio4j Go Tools AIR app screenshot

Enjoy it  ;)


Source: http://blog.bio4j.com/2011/03/bio4j-go-tools-first-version-available/
Web Service app Visualization (graphics) Annotation AIR (program) Gephi Requests POST (HTTP) application

Opinions expressed by DZone contributors are their own.

Popular on DZone

  • What Is Cloud-Native Architecture?
  • A Guide to Understanding Vue Lifecycle Hooks
  • A Guide to Events in Vue
  • How to Use Geofences for Precise Audience Messaging

Comments

Java Partner Resources

X

ABOUT US

  • About DZone
  • Send feedback
  • Careers
  • Sitemap

ADVERTISE

  • Advertise with DZone

CONTRIBUTE ON DZONE

  • Article Submission Guidelines
  • MVB Program
  • Become a Contributor
  • Visit the Writers' Zone

LEGAL

  • Terms of Service
  • Privacy Policy

CONTACT US

  • 600 Park Offices Drive
  • Suite 300
  • Durham, NC 27709
  • support@dzone.com
  • +1 (919) 678-0300

Let's be friends:

DZone.com is powered by 

AnswerHub logo