Example of unit testing R code with testthat
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Join For FreeHere’s a little example of using Hadley Wickham’s testthat
package for unit testing R code. You can read more about testthat
here.
The function below computes the real roots of a quadratic. All that really matters for our purposes is that the function can return 0, 1, or 2 numbers and it could raise an error.
real.roots < function(a, b, c) { if (a == 0.) stop("Leading term cannot be zero") d = b*b  4*a*c # discriminant if (d < 0) rr = c() else if (d == 0) rr = c( b/(2*a) ) else rr = c( (b  sqrt(d))/(2*a), (b + sqrt(d))/(2*a) ) return(rr) }
To test this code with testthat
we create another file for tests. The name of the file should begin with test
so that testthat
can recognize it as a file of test code. So let name the file containing the code above real_roots.R
and the file containing its teststest_real_roots.R
.
The test file needs to read in the file being tested.
source("real_roots.R")
Now let’s write some tests for the case of a quadratic with two real roots.
test_that("Distinct roots", { roots < real.roots(1, 7, 12) expect_that( roots, is_a("numeric") ) expect_that( length(roots), equals(2) ) expect_that( roots[1] < roots[2], is_true() ) })
This tests that we get back two numbers and that they are sorted in increasing order.
Next we find the roots of (x + 3000)^{2} = x^{2} + 6000x + 9000000. We’ll test whether we get back 3000 as the only root. In general you can’t expect to get an exact answer, though in this case we do since the root is an integer. But we’ll show in the next example how to test for equality with a given tolerance.
test_that("Repeated root", { roots < real.roots(1, 6000, 9000000) expect_that( length(roots), equals(1) ) expect_that( roots, equals(3000) ) # Test whether ABSOLUTE error is within 0.1 expect_that( roots, equals(3000.01, tolerance = 0.1) ) # Test whether RELATIVE error is within 0.1 # To test relative error, set 'scale' equal to expected value. # See base R function all.equal for optional argument documentation. expect_equal( roots, 3001, tolerance = 0.1, scale=3001) })
To show how to test code that should raise an error, we’ll find the roots of 2x + 3, which isn’t a quadratic. Notice that you can test whether any error is raised or you can test whether the error message matches a given regular expression.
test_that("Polynomial must be quadratic", { # Test for ANY error expect_that( real.roots(0, 2, 3), throws_error() ) # Test specifically for an error string containing "zero" expect_that( real.roots(0, 2, 3), throws_error("zero") ) # Test specifically for an error string containing "zero" or "Zero" using regular expression expect_that( real.roots(0, 2, 3), throws_error("[zZ]ero") ) })
Finally, here are a couple tests that shouldn’t pass.
test_that("Bogus tests", { x < c(1, 2, 3) expect_that( length(x), equals(2.7) ) expect_that( x, is_a("data.frame") ) })
To run the tests, you can run test_dir
or test_file
. If you are at the R command line and your working directory is the directory containing the two files above, you could run the tests with test_dir(".")
. In this case we have only one file of test code, but if we had more test files test_dir
would find them, provided the file names begin with test
.
Published at DZone with permission of John Cook, DZone MVB. See the original article here.
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