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Optimization in R
Optimization is a very common problem in data analytics. Given a set of variables (which one has control), how to pick the right value such that the benefit is maximized. More formally, optimization is about determining a set of variables x1, x2, … that maximize or minimize an objective function f(x1, x2, …). Unconstrained optimization In an unconstraint case, the variable can be freely selected within its full range. A typical solution is to compute the gradient vector of the objective function [∂f/∂x1, ∂f/∂x2, …] and set it to [0, 0, …]. Solve this equation and output the result x1, x2 … which will give the local maximum. In R, this can be done by a numerical analysis method. > f <- function(x){(x[1] - 5)^2 + (x[2] - 6)^2} > initial_x <- c(10, 11) > x_optimal <- optim(initial_x, f, method="CG") > x_min <- x_optimal$par > x_min [1] 5 6 Equality constraint optimization Moving onto the constrained case, lets say x1, x2 … are not independent and then have to related to each other in some particular way: g1(x1, x2, …) = 0, g2(x1, x2, …) = 0. The optimization problem can be expressed as … Maximize objective function: f(x1, x2, …) Subjected to equality constraints: g1(x1, x2, …) = 0 g2(x1, x2, …) = 0 A typical solution is to turn the constraint optimization problem into an unconstrained optimization problem using Lagrange multipliers. Define a new function F as follows ... F(x1, x2, …, λ1, λ2, …) = f(x1, x2, …) + λ1.g1(x1, x2, …) + λ2.g2(x1, x2, …) + … Then solve for ... [∂F/∂x1, ∂F/∂x2, …, ∂F/∂λ1, ∂F/∂λ2, …] = [0, 0, ….] Inequality constraint optimization In this case, the constraint is inequality. We cannot use the Lagrange multiplier technique because it requires equality constraint. There is no general solution for arbitrary inequality constraints. However, we can put some restriction in the form of constraint. In the following, we study two models where constraint is restricted to be a linear function of the variables: w1.x1 + w2.x2 + … >= 0 Linear Programming Linear programming is a model where both the objective function and constraint function is restricted as linear combination of variables. The Linear Programming problem can be defined as follows ... Maximize objective function: f(x1, x2) = c1.x1 + c2.x2 Subjected to inequality constraints: a11.x1 + a12.x2 <= b1 a21.x1 + a22.x2 <= b2 a31.x1 + a32.x2 <= b3 x1 >= 0, x2 >=0 As an illustrative example, lets walkthrough a portfolio investment problem. In the example, we want to find an optimal way to allocate the proportion of asset in our investment portfolio. StockA gives 5% return on average StockB gives 4% return on average StockC gives 6% return on average To set some constraints, lets say my investment in C must be less than sum of A, B. Also, investment in A cannot be more than twice of B. Finally, at least 10% of investment in each stock. To formulate this problem: Variable: x1 = % investment in A, x2 = % in B, x3 = % in C Maximize expected return: f(x1, x2, x3) = x1*5% + x2*4% + x3*6% Subjected to constraints: 10% < x1, x2, x3 < 100% x1 + x2 + x3 = 1 x3 < x1 + x2 x1 < 2 * x2 > library(lpSolve) > library(lpSolveAPI) > # Set the number of vars > model <- make.lp(0, 3) > # Define the object function: for Minimize, use -ve > set.objfn(model, c(-0.05, -0.04, -0.06)) > # Add the constraints > add.constraint(model, c(1, 1, 1), "=", 1) > add.constraint(model, c(1, 1, -1), ">", 0) > add.constraint(model, c(1, -2, 0), "<", 0) > # Set the upper and lower bounds > set.bounds(model, lower=c(0.1, 0.1, 0.1), upper=c(1, 1, 1)) > # Compute the optimized model > solve(model) [1] 0 > # Get the value of the optimized parameters > get.variables(model) [1] 0.3333333 0.1666667 0.5000000 > # Get the value of the objective function > get.objective(model) [1] -0.05333333 > # Get the value of the constraint > get.constraints(model) [1] 1 0 0 Quadratic Programming Quadratic programming is a model where both the objective function is a quadratic function (contains up to two term products) while constraint function is restricted as linear combination of variables. The Quadratic Programming problem can be defined as follows ... Minimize quadratic objective function: f(x1, x2) = c1.x12 + c2. x1x2 + c2.x22 - (d1. x1 + d2.x2) Subject to constraints a11.x1 + a12.x2 == b1 a21.x1 + a22.x2 == b2 a31.x1 + a32.x2 >= b3 a41.x1 + a42.x2 >= b4 a51.x1 + a52.x2 >= b5 Express the problem in Matrix form: Minimize objective ½(DTx) - dTx Subject to constraint ATx >= b First k columns of A is equality constraint As an illustrative example, lets continue on the portfolio investment problem. In the example, we want to find an optimal way to allocate the proportion of asset in our investment portfolio. StockA gives 5% return on average StockB gives 4% return on average StockC gives 6% return on average We also look into the variance of each stock (known as risk) as well as the covariance between stocks. For investment, we not only want to have a high expected return, but also a low variance. In other words, stocks with high return but also high variance is not very attractive. Therefore, maximize the expected return and minimize the variance is the typical investment strategy. One way to minimize variance is to pick multiple stocks (in a portfolio) to diversify the investment. Diversification happens when the stock components within the portfolio moves from their average in different direction (hence the variance is reduced). The Covariance matrix ∑ (between each pairs of stocks) is given as follows: 1%, 0.2%, 0.5% 0.2%, 0.8%, 0.6% 0.5%, 0.6%, 1.2% In this example, we want to achieve a overall return of at least 5.2% of return while minimizing the variance of return To formulate the problem: Variable: x1 = % investment in A, x2 = % in B, x3 = % in C Minimize variance: xT∑x Subjected to constraint: x1 + x2 + x3 == 1 X1*5% + x2*4% + x3*6% >= 5.2% 0% < x1, x2, x3 < 100% > library(quadprog) > mu_return_vector <- c(0.05, 0.04, 0.06) > sigma <- matrix(c(0.01, 0.002, 0.005, + 0.002, 0.008, 0.006, + 0.005, 0.006, 0.012), + nrow=3, ncol=3) > D.Matrix <- 2*sigma > d.Vector <- rep(0, 3) > A.Equality <- matrix(c(1,1,1), ncol=1) > A.Matrix <- cbind(A.Equality, mu_return_vector, diag(3)) > b.Vector <- c(1, 0.052, rep(0, 3)) > out <- solve.QP(Dmat=D.Matrix, dvec=d.Vector, Amat=A.Matrix, bvec=b.Vector, meq=1) > out$solution [1] 0.4 0.2 0.4 > out$value [1] 0.00672 > Integration with Predictive Analytics Optimization is usually integrated with predictive analytics, which is another important part of data analytics. For an overview of predictive analytics, here is my previous blog about it. The overall processing can be depicted as follows: In this diagram, we use machine learning to train a predictive model in batch mode. Once the predictive model is available, observation data is fed into it at real time and a set of output variables is predicted. Such output variable will be fed into the optimization model as the environment parameters (e.g. return of each stock, covariance ... etc.) from which a set of optimal decision variable is recommended.
January 15, 2013
by Ricky Ho
· 9,917 Views
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The Definitive Gradle Guide for NetBeans IDE
Gradle is a build tool like Ant and Maven only much, much better!
January 14, 2013
by Attila Kelemen
· 65,796 Views · 1 Like
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Measure Elapsed Time with Camel
Apache Camel provides an event notifier support class which allows you to keep information about what happened on Exchange, Route and Endpoint. One of the benefits of this class is that you can easily audit messages created in Camel Routes, collect information and report that in log by example. When developing an application, it is very important to calculate/measure elapsed time on the platform to find which part of your code, processor or system integrated which is the bad duck and must be improved. In three steps, I would show you How to enable this mechanism to report : - Time elapsed to call an endpoint (could be another camel route, web service, ...) - Time elapsed on the route exchange STEP 1 - Create a Class implementing the EventNotifierSupport public class AuditEventNotifier extends EventNotifierSupport { public void notify(EventObject event) throws Exception { if (event instanceof ExchangeSentEvent) { ExchangeSentEvent sent = (ExchangeSentEvent) event; log.info(">>> Took " + sent.getTimeTaken() + " millis to send to external system : " + sent.getEndpoint()); } if (event instanceof ExchangeCompletedEvent) {; ExchangeCompletedEvent exchangeCompletedEvent = (ExchangeCompletedEvent) event; Exchange exchange = exchangeCompletedEvent.getExchange(); String routeId = exchange.getFromRouteId(); Date created = ((ExchangeCompletedEvent) event).getExchange().getProperty(Exchange.CREATED_TIMESTAMP, Date.class); // calculate elapsed time Date now = new Date(); long elapsed = now.getTime() - created.getTime(); log.info(">>> Took " + elapsed + " millis for the exchange on the route : " + routeId); } } public boolean isEnabled(EventObject event) { return true; } protected void doStart() throws Exception { // filter out unwanted events setIgnoreCamelContextEvents(true); setIgnoreServiceEvents(true); setIgnoreRouteEvents(true); setIgnoreExchangeCreatedEvent(true); setIgnoreExchangeCompletedEvent(false); setIgnoreExchangeFailedEvents(true); setIgnoreExchangeRedeliveryEvents(true); setIgnoreExchangeSentEvents(false); } protected void doStop() throws Exception { // noop } } Not really complicated and the code is explicit. Check the doStart() method to enable/disable the events for which you would like to gather information. This example uses only Exchange.CREATED_TIMESTAMP property but the next version of Camel 2.7.0 will provide you the property exchange.RECEIVED_TIMESTAMP and so you will be able to calculate more easily the time spend by the exchange to call the different processors till it arrives at the end of the route. This example collects Date information but you can imagine to use this mechanism to check if your route processes the message according to SLA, .... STEP 2 - Instantiate the bean in Camel Spring XML By adding this bean definition, Camel will automatically register it to the CamelContext created. STEP 3 - Collect info into the log 18:10:46,060 | INFO | tp1238469515-285 | AuditEventNotifier | ? ? | 68 - org.apache.camel.camel-core - 2.6.0.fuse-00-00 | >>> Took 3 millis for the exchange on the route : mock-HTTP-Server 18:10:46,062 | INFO | tp2056154542-293 | AuditEventNotifier | ? ? | 68 - org.apache.camel.camel-core - 2.6.0.fuse-00-00 | >>> Took 25 millis to send to external system : Endpoint[http://localhost:9191/sis] 18:10:46,077 | INFO | tp2056154542-293 | AuditEventNotifier | ? ? | 68 - org.apache.camel.camel-core - 2.6.0.fuse-00-00 | >>> Took 103 millis for the exchange on the route : ws-to-sis
January 11, 2013
by Charles Moulliard
· 12,379 Views
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Display and Format Negative Currency Values in C#
This small tip about how to show the negative currency value in your application. For Example if you have currency value like -1234 and you want to display it like -$1,234 according to you culture. Problem In C# to one of the way to format currency value easily is use ToString("c") with value will do work for you. For example check below code //format -1234 as currency.. Console.WriteLine((-1234).ToString("c")); Output This will display value in output like this ($1,234.00). But the actual problem with the formatting is its not displaying - sign with currency value. Solution So to come out of this You need to create a custom NumberFormatInfo from your current locale. Then you can specify it's CurrencyNegativePattern, for example: CultureInfo currentCulture = Thread.CurrentThread.CurrentCulture; CultureInfo newCulture = new CultureInfo(currentCulture.Name); newCulture.NumberFormat.CurrencyNegativePattern = 1; Thread.CurrentThread.CurrentCulture = newCulture; Console.WriteLine((-1234).ToString("c")); Output Now output of the above code is -$1,234.00. That's what actually needed display negative sign for negative currency value. So in above code actual trick done by NumberFormatInfo.CurrencyNegativePattern Property, which is set to 1 which associated with pattern -$n. There number of different pattern supported which you can check on MSDN and assign value to property according to your need. This will not affect positive value of currency i.e. if you pas 1234 as value its dispaly as $1,234 only. And for this this example my current culture is "en-US" . Conclusion I Hope you all like this simple and easy example of formatting negative currency. you can explore more on MSDN on reference provided at end of post. NumberFormatInfo Class - http://msdn.microsoft.com/en-us/library/system.globalization.numberformatinfo.aspx NumberFormatInfo.CurrencyNegativePattern Property - http://msdn.microsoft.com/en-us/library/system.globalization.numberformatinfo.currencynegativepattern.aspx
January 11, 2013
by Pranay Rana
· 18,417 Views
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Enabling CLIENT-CERT based authorization on Tomcat: Part 1
In continuation with my earlier blog on Enabling SSL on Tomcat, in this blog I will go to next step and enable CLIENT-CERT based authorization on Tomcat. Again if you want to tryout the code go to my Github and download the code. For this sample, I assume that you have tried my earlier SSL example on Tomcat and have the setup. As per the SSL example I assume, You have setup Tomcat 6.0 version You have set the SSL Connector Configuration in Tomcat server.xml You have started the Tomcat server and run the SecureHttpClient0Test test In this blog, I will show you how to, Setup MemoryRealm In the server.xml comment the Realm tag and replace that with the code below, Setup user role setup In /conf/tomcat-users.xml Setup security-contraint Add access control in the individual application web.xml as below, Demo App /secure/* GET secureconn CLIENT-CERT Demo App secureconn Run JUnit test Open the class src/test/java/com/goSmarter/test/SecureHttpClient1Test.java file and change the below code to point to /conf folder public static final String path = "D:/apache-tomcat-6.0.36/conf/"; Start the Tomcat and run the JUnit test using “mvn test -Dtest=”com.goSmarter.test.SecureHttpClient1Test” If you want to debug the Realm, you need to increase the log level for Realm in /conf/logging.properties as below, org.apache.catalina.realm.level = ALL org.apache.catalina.realm.useParentHandlers = true org.apache.catalina.authenticator.level = ALL org.apache.catalina.authenticator.useParentHandlers = true If you notice there are 2 positive tests and 1 negative test, negative test will give a forbidden 403 return status when a wrong certificate is sent based on the security-constraint. I hope this blog helped you.
January 10, 2013
by Krishna Prasad
· 17,778 Views
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Python Testing - PhantomJS with Selenium WebDriver
PhantomJS is a headless WebKit with JavaScript API. It can be used for headless website testing. PhantomJS has a lot of different uses. The interesting bit for me is to use PhantomJS as a lighter-weight replacement for a browser when running web acceptance tests. This enables faster testing, without a display or the overhead of full-browser startup/shutdown. I write my web automation using Selenium WebDriver, in Python. In future versions of PhantomJS, the GhostDriver component will be included. GhostDriver is a pure JavaScript implementation of the WebDriver Wire Protocol for PhantomJS. It's a Remote WebDriver that uses PhantomJS as back-end. So, Ghostdriver is the bridge we need to use Selenium WebDriver with Phantom.JS. Since it is not available in the current PhantomJS release, you can try it yourself by compiling a special version of PhantomJS: It wes pretty trvial to setup on Ubuntu (12.04): $ sudo apt-get install build-essential chrpath git-core libssl-dev libfontconfig1-dev $ git clone git://github.com/ariya/phantomjs.git $ cd phantomjs $ git checkout 1.8 $ ./build.sh $ git remote add detro https://github.com/detro/phantomjs.git $ git fetch detro && git checkout -b detro-ghostdriver-dev remotes/detro/ghostdriver-dev $ ./build.sh Then grab the `phantomjs` binary it produced (look inside `phantomjs/bin`). This is a self-contained executable, it can be moved to a different directory or another machine. Make sure it is located somewhere on your PATH, or declare it's location when creating your PhantomJS driver like the example below. for these examples, `phantomjs` binary is located in same directory as test script. Example: Python Using PhantomJS and Selenium WebDriver. #!/usr/bin/env python driver = webdriver.PhantomJS('./phantomjs') # do webdriver stuff here driver.quit() Example: Python Unit Test Using PhantomJS and Selenium WebDriver. #!/usr/bin/env python import unittest from selenium import webdriver class TestUbuntuHomepage(unittest.TestCase): def setUp(self): self.driver = webdriver.PhantomJS('./phantomjs') def testTitle(self): self.driver.get('http://www.ubuntu.com/') self.assertIn('Ubuntu', self.driver.title) def tearDown(self): self.driver.quit() if __name__ == '__main__': unittest.main(verbosity=2) resources: http://phantomjs.org/build.html https://github.com/detro/ghostdriver Selenium WebDriver Python API Documentation
January 8, 2013
by Corey Goldberg
· 42,796 Views
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Generic Exceptions in Java
Wow, I can’t believe it’s been 6 weeks since I last blogged. I still need to write up a review on Plumbr, after seeing it in action at Devoxx, but to ease me back into the writing game, here’s a small(-ish) but useful spot of Java. It’s always nice to borrow and steal concepts and ideas from other languages. Scala’s Option is one idea I really like, so I wrote an implementation in Java. It wraps an object which may or may not be null, and provides some methods to work with in a more kinda-sorta functional way. For example, the isDefined method adds an object-oriented way of checking if a value is null. It is then used in other places, such as the getOrElse method, which basically says “give me what you’re wrapping, or a fallback if it’s null”. public T getOrElse(T fallback) { return isDefined() ? get() : fallback; } In practice, this would replace tradional Java, such as public void foo() { String s = dao.getValue(); if (s == null) { s = "bar"; } System.out.println(s); } with the more concise and OO public void foo() { Option s = dao.getValue(); System.out.println(s.getOrElse("bar")); } However, what if I want to do something other than get a fallback value – say, throw an exception? More to the point, what if I want to throw a specific type of exception that is both specific in use and not hard-coded into Option? This requires a spot of cunning, and a splash of type inference. Because this is Java, we can start with a new factory – ExceptionFactory. This is a basic implementation that only creates exceptions constructed with a message, but you can of course expand the code as required. public interface ExceptionFactory { E create(String message); } Notice the – this is the key to how this works. Using the factory, we can now add a new method to Option: public T getOrThrow(ExceptionFactory exceptionFactory, String message) throws E { if (isDefined()) { return get(); } else { throw exceptionFactory.create(message); } } Again, notice the throws E – this is inferred from the exception factory. And that, believe it or not, is 90% of what it takes. The one irritation is the need to have exception factories. If you can stomach this, you’re all set. Let’s define a couple of custom exceptions to see this in action. public class ExceptionA extends Exception { public ExceptionA(String message) { super(message); } public static ExceptionFactory factory() { return new ExceptionFactory() { @Override public ExceptionA create(String message) { return new ExceptionA(message); } }; } } And the suspiciously similar ExceptionB public class ExceptionB extends Exception { public ExceptionB(String message) { super(message); } public static ExceptionFactory factory() { return new ExceptionFactory() { @Override public ExceptionB create(String message) { return new ExceptionB(message); } }; } } And finally, throw it all together: public class GenericExceptionTest { @Test(expected = ExceptionA.class) public void exceptionA_throw() throws ExceptionA { Option.option(null).getOrThrow(ExceptionA.factory(), "Some message pertinent to the situation"); } @Test public void exceptionA_noThrow() throws ExceptionA { String s = Option.option("foo").getOrThrow(ExceptionA.factory(), "Some message pertinent to the situation"); Assert.assertEquals("foo", s); } @Test(expected = ExceptionB.class) public void exceptionB_throw() throws ExceptionB { Option.option(null).getOrThrow(ExceptionB.factory(), "Some message pertinent to the situation"); } @Test public void exceptionB_noThrow() throws ExceptionB { String s = Option.option("foo").getOrThrow(ExceptionB.factory(), "Some message pertinent to the situation"); Assert.assertEquals("foo", s); } } The important thing to notice, as highlighted in bold above, is the exception declared in the method signature is specific – it’s not a common ancestor (Exception or Throwable). This means you can now use Options in your DAO layer, your service layer, wherever, and throw specific exceptions where and how you need. Download source: You can get the source code and tests from here – genex Sidenote One other interesting thing that came out of writing this was the observation that it’s possible to do this: public void foo() { throw null; } public void bar() { try { foo(); } catch (NullPointerException e) { ... } } It goes without saying that this is not a good idea
January 7, 2013
by Steve Chaloner
· 31,353 Views
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SLF4J Logging in Eclipse Plugins
developing with maven and pure java libraries all the time, i never thought it could be a problem to issue a few log statements when developing an eclipse plugin. but it looks like in the imaginary of an eclipse developer everything is always inside the eclipse environment and nothing is outside the eclipse universe. if you search for the above headline using google, one of the first articles you’ll find is one about the “platform logging facility”. but what about 3rd libraries? they cannot use an eclipse-based logging framework. in my libraries i use the slf4j api and leave it up to the user to decide what logging implementation (log4j, logback, jdk) he or she wants to use. and that’s exactly what i want to do in eclipse. it was hard to figure out exactly how to do it, but here are the pieces of that puzzle. phase 1: development this describes the steps during the development phase of your custom plugin. step 1: get your libaries into a p2 repository everything you want to use in eclipse has to be installed from a p2 repository. but most of the libaries i use are in a maven repository. as far as i know there is no such thing as a main p2 repository similar to the “maven central,” and all libraries i found in p2 repositories were pretty old. so you have to create one by yourself. luckily there is a maven plugin called p2-maven-plugin that converts all your maven jars into a single p2 repository. you can upload the plugin to a folder of your website or simply install it from your local hard drive. for this example you’ll need the following libraries: org.slf4j:slf4j-api:1.6.6 org.slf4j:slf4j-log4j12:1.6.6 log4j:log4j:1.2.17 org.ops4j.pax.logging:pax-logging-api:1.7.0 org.ops4j.pax.logging:pax-logging-service:1.7.0 org.ops4j.pax.confman:pax-confman-propsloader:0.2.2 format “groupid:artifactid:version” is as used for the “p2-maven-plugin.” to skip this step you could also use http://www.fuin.org/p2-repository/ . step 2: install the slf4j api in the eclipse ide select “help / install new software…”. add the p2 repository url and install the “slf4j-api”—you could directly use the folder from step 1 with a file url like this: “file:/pathtoyour/p2-repository/”. add the freshly installed “slf4j.api” to your manifest.mf. start using slf4j logs in your code as usual. phase 2: production this describes the tasks a user of your custom plugin has to complete to start logging with log4j. the following assumes that your custom plugin is already installed. step 1: install the log libraries in the eclipse ide select “help / install new software…”. install the “equinox target components” from the eclipse update site. add the p2 repository url and install the following plugins: apache log4j ops4j pax confman–properties loader ops4j pax logging–api ops4j pax logging–service step 2: configure pax logging set the location for your log configuration in the “eclipse.ini” as “vmarg" … -vmargs -xms40m -xmx512m -dbundles.configuration.location= … create a folder named “services” in the above “config-dir.” create log4j properties named “org.ops4j.pax.logging.properties” in “services.” log4j.rootlogger=info, file log4j.appender.file=org.apache.log4j.fileappender log4j.appender.file.file=/example.log log4j.appender.file.layout=org.apache.log4j.patternlayout log4j.appender.file.layout.conversionpattern=%d{yyyy/mm/dd hh:mm:ss,sss} [%t] %-5p %c %x - %m%n log4j.logger.your.package=debug step 3: activate pax logging open the “console” view. select the “host osgi console.” start the following bundles: start org.eclipse.equinox.cm start org.ops4j.pax.logging.pax-logging-api start org.ops4j.pax.logging.pax-logging-service start org.ops4j.pax.configmanager now you should be able to see your log statements in the configured “example.log” file. step 4: changing the configuration if you want to change the configuration in the “org.ops4j.pax.logging.properties”, simply restart the pax configmanager in the osgi console stop org.ops4j.pax.configmanager start org.ops4j.pax.configmanager happy logging!
January 6, 2013
by Michael Schnell
· 39,267 Views · 1 Like
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Chunk Oriented Processing in Spring Batch
Big Data Sets’ Processing is one of the most important problem in the software world. Spring Batch is a lightweight and robust batch framework to process the data sets. Spring Batch Framework offers ‘TaskletStep Oriented’ and ‘Chunk Oriented’ processing style. In this article, Chunk Oriented Processing Model is explained. Also, TaskletStep Oriented Processing in Spring Batch Article is definitely suggested to investigate how to develop TaskletStep Oriented Processing in Spring Batch. Chunk Oriented Processing Feature has come with Spring Batch v2.0. It refers to reading the data one at a time, and creating ‘chunks’ that will be written out, within a transaction boundary. One item is read from an ItemReader, handed to an ItemProcessor, and written. Once the number of items read equals the commit interval, the entire chunk is written out via the ItemWriter, and then the transaction is committed. Basically, this feature should be used if at least one data item’ s reading and writing is required. Otherwise, TaskletStep Oriented processing can be used if the data item’ s only reading or writing is required. Chunk Oriented Processing model exposes three important interface as ItemReader, ItemProcessor and ItemWriter via org.springframework.batch.item package. ItemReader : This interface is used for providing the data. It reads the data which will be processed. ItemProcessor : This interface is used for item transformation. It processes input object and transforms to output object. ItemWriter : This interface is used for generic output operations. It writes the datas which are transformed by ItemProcessor. For example, the datas can be written to database, memory or outputstream (etc). In this sample application, we will write to database. Let us take a look how to develop Chunk Oriented Processing Model. Used Technologies : JDK 1.7.0_09 Spring 3.1.3 Spring Batch 2.1.9 Hibernate 4.1.8 Tomcat JDBC 7.0.27 MySQL 5.5.8 MySQL Connector 5.1.17 Maven 3.0.4 Step 1 : Create Maven Project A maven project is created as below. (It can be created by using Maven or IDE Plug-in). Step 2: Libraries A new USER Table is created by executing below script: CREATE TABLE ONLINETECHVISION.USER ( id int(11) NOT NULL AUTO_INCREMENT, name varchar(45) NOT NULL, surname varchar(45) NOT NULL, PRIMARY KEY (`id`) ); Step 3: Libraries Firstly, dependencies are added to Maven’ s pom.xml. 3.1.3.RELEASE 2.1.9.RELEASE org.springframework spring-core ${spring.version} org.springframework spring-context ${spring.version} org.springframework spring-tx ${spring.version} org.springframework spring-orm ${spring.version} org.springframework.batch spring-batch-core ${spring-batch.version} org.hibernate hibernate-core 4.1.8.Final org.apache.tomcat tomcat-jdbc 7.0.27 mysql mysql-connector-java 5.1.17 log4j log4j 1.2.16 maven-compiler-plugin(Maven Plugin) is used to compile the project with JDK 1.7 org.apache.maven.plugins maven-compiler-plugin 3.0 1.7 1.7 The following Maven plugin can be used to create runnable-jar, org.apache.maven.plugins maven-shade-plugin 2.0 package shade 1.7 1.7 com.onlinetechvision.exe.Application META-INF/spring.handlers META-INF/spring.schemas Step 4 : Create User Entity User Entity is created. This entity will be stored after processing. package com.onlinetechvision.user; import javax.persistence.Column; import javax.persistence.Entity; import javax.persistence.GeneratedValue; import javax.persistence.GenerationType; import javax.persistence.Id; import javax.persistence.Table; /** * User Entity * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ @Entity @Table(name="USER") public class User { private int id; private String name; private String surname; @Id @GeneratedValue(strategy=GenerationType.AUTO) @Column(name="ID", unique = true, nullable = false) public int getId() { return id; } public void setId(int id) { this.id = id; } @Column(name="NAME", unique = true, nullable = false) public String getName() { return name; } public void setName(String name) { this.name = name; } @Column(name="SURNAME", unique = true, nullable = false) public String getSurname() { return surname; } public void setSurname(String surname) { this.surname = surname; } @Override public String toString() { StringBuffer strBuff = new StringBuffer(); strBuff.append("id : ").append(getId()); strBuff.append(", name : ").append(getName()); strBuff.append(", surname : ").append(getSurname()); return strBuff.toString(); } } Step 5 : Create IUserDAO Interface IUserDAO Interface is created to expose data access functionality. package com.onlinetechvision.user.dao; import java.util.List; import com.onlinetechvision.user.User; /** * User DAO Interface * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public interface IUserDAO { /** * Adds User * * @param User user */ void addUser(User user); /** * Gets User List * */ List getUsers(); } Step 6 : Create UserDAO IMPL UserDAO Class is created by implementing IUserDAO Interface. package com.onlinetechvision.user.dao; import java.util.List; import org.hibernate.SessionFactory; import com.onlinetechvision.user.User; /** * User DAO * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class UserDAO implements IUserDAO { private SessionFactory sessionFactory; /** * Gets Hibernate Session Factory * * @return SessionFactory - Hibernate Session Factory */ public SessionFactory getSessionFactory() { return sessionFactory; } /** * Sets Hibernate Session Factory * * @param SessionFactory - Hibernate Session Factory */ public void setSessionFactory(SessionFactory sessionFactory) { this.sessionFactory = sessionFactory; } /** * Adds User * * @param User user */ @Override public void addUser(User user) { getSessionFactory().getCurrentSession().save(user); } /** * Gets User List * * @return List - User list */ @SuppressWarnings({ "unchecked" }) @Override public List getUsers() { List list = getSessionFactory().getCurrentSession().createQuery("from User").list(); return list; } } Step 7 : Create IUserService Interface IUserService Interface is created for service layer. package com.onlinetechvision.user.service; import java.util.List; import com.onlinetechvision.user.User; /** * * User Service Interface * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public interface IUserService { /** * Adds User * * @param User user */ void addUser(User user); /** * Gets User List * * @return List - User list */ List getUsers(); } Step 8 : Create UserService IMPL UserService Class is created by implementing IUserService Interface. package com.onlinetechvision.user.service; import java.util.List; import org.springframework.transaction.annotation.Transactional; import com.onlinetechvision.user.User; import com.onlinetechvision.user.dao.IUserDAO; /** * * User Service * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ @Transactional(readOnly = true) public class UserService implements IUserService { IUserDAO userDAO; /** * Adds User * * @param User user */ @Transactional(readOnly = false) @Override public void addUser(User user) { getUserDAO().addUser(user); } /** * Gets User List * */ @Override public List getUsers() { return getUserDAO().getUsers(); } public IUserDAO getUserDAO() { return userDAO; } public void setUserDAO(IUserDAO userDAO) { this.userDAO = userDAO; } } Step 9 : Create TestReader IMPL TestReader Class is created by implementing ItemReader Interface. This class is called in order to read items. When read method returns null, reading operation is completed. The following steps explains with details how to be executed firstJob. The commit-interval value of firstjob is 2 and the following steps are executed : 1) firstTestReader is called to read first item(firstname_0, firstsurname_0) 2) firstTestReader is called again to read second item(firstname_1, firstsurname_1) 3) testProcessor is called to process first item(FIRSTNAME_0, FIRSTSURNAME_0) 4) testProcessor is called to process second item(FIRSTNAME_1, FIRSTSURNAME_1) 5) testWriter is called to write first item(FIRSTNAME_0, FIRSTSURNAME_0) to database 6) testWriter is called to write second item(FIRSTNAME_1, FIRSTSURNAME_1) to database 7) first and second items are committed and the transaction is closed. 8) firstTestReader is called to read third item(firstname_2, firstsurname_2) 9) maxIndex value of firstTestReader is 3. read method returns null and item reading operation is completed. 10) testProcessor is called to process third item(FIRSTNAME_2, FIRSTSURNAME_2) 11) testWriter is called to write first item(FIRSTNAME_2, FIRSTSURNAME_2) to database 12) third item is committed and the transaction is closed. firstStep is completed with COMPLETED status and secondStep is started. secondJob and thirdJob are executed in the same way. package com.onlinetechvision.item; import org.springframework.batch.item.ItemReader; import org.springframework.batch.item.NonTransientResourceException; import org.springframework.batch.item.ParseException; import org.springframework.batch.item.UnexpectedInputException; import com.onlinetechvision.user.User; /** * TestReader Class is created to read items which will be processed * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class TestReader implements ItemReader { private int index; private int maxIndex; private String namePrefix; private String surnamePrefix; /** * Reads items one by one * * @return User * * @throws Exception * @throws UnexpectedInputException * @throws ParseException * @throws NonTransientResourceException * */ @Override public User read() throws Exception, UnexpectedInputException, ParseException, NonTransientResourceException { User user = new User(); user.setName(getNamePrefix() + "_" + index); user.setSurname(getSurnamePrefix() + "_" + index); if(index > getMaxIndex()) { return null; } incrementIndex(); return user; } /** * Increments index which defines read-count * * @return int * */ private int incrementIndex() { return index++; } public int getMaxIndex() { return maxIndex; } public void setMaxIndex(int maxIndex) { this.maxIndex = maxIndex; } public String getNamePrefix() { return namePrefix; } public void setNamePrefix(String namePrefix) { this.namePrefix = namePrefix; } public String getSurnamePrefix() { return surnamePrefix; } public void setSurnamePrefix(String surnamePrefix) { this.surnamePrefix = surnamePrefix; } } Step 10 : Create FailedCaseTestReader IMPL FailedCaseTestReader Class is created in order to simulate the failed job status. In this sample application, when thirdJob is processed at fifthStep, failedCaseTestReader is called and exception is thrown so its status will be FAILED. package com.onlinetechvision.item; import org.springframework.batch.item.ItemReader; import org.springframework.batch.item.NonTransientResourceException; import org.springframework.batch.item.ParseException; import org.springframework.batch.item.UnexpectedInputException; import com.onlinetechvision.user.User; /** * FailedCaseTestReader Class is created in order to simulate the failed job status. * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class FailedCaseTestReader implements ItemReader { private int index; private int maxIndex; private String namePrefix; private String surnamePrefix; /** * Reads items one by one * * @return User * * @throws Exception * @throws UnexpectedInputException * @throws ParseException * @throws NonTransientResourceException * */ @Override public User read() throws Exception, UnexpectedInputException, ParseException, NonTransientResourceException { User user = new User(); user.setName(getNamePrefix() + "_" + index); user.setSurname(getSurnamePrefix() + "_" + index); if(index >= getMaxIndex()) { throw new Exception("Unexpected Error!"); } incrementIndex(); return user; } /** * Increments index which defines read-count * * @return int * */ private int incrementIndex() { return index++; } public int getMaxIndex() { return maxIndex; } public void setMaxIndex(int maxIndex) { this.maxIndex = maxIndex; } public String getNamePrefix() { return namePrefix; } public void setNamePrefix(String namePrefix) { this.namePrefix = namePrefix; } public String getSurnamePrefix() { return surnamePrefix; } public void setSurnamePrefix(String surnamePrefix) { this.surnamePrefix = surnamePrefix; } } Step 11 : Create TestProcessor IMPL TestProcessor Class is created by implementing ItemProcessor Interface. This class is called to process items. User item is received from TestReader, processed and returned to TestWriter. package com.onlinetechvision.item; import java.util.Locale; import org.springframework.batch.item.ItemProcessor; import com.onlinetechvision.user.User; /** * TestProcessor Class is created to process items. * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class TestProcessor implements ItemProcessor { /** * Processes items one by one * * @param User user * @return User * @throws Exception * */ @Override public User process(User user) throws Exception { user.setName(user.getName().toUpperCase(Locale.ENGLISH)); user.setSurname(user.getSurname().toUpperCase(Locale.ENGLISH)); return user; } } Step 12 : Create TestWriter IMPL TestWriter Class is created by implementing ItemWriter Interface. This class is called to write items to DB, memory etc… package com.onlinetechvision.item; import java.util.List; import org.springframework.batch.item.ItemWriter; import com.onlinetechvision.user.User; import com.onlinetechvision.user.service.IUserService; /** * TestWriter Class is created to write items to DB, memory etc... * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class TestWriter implements ItemWriter { private IUserService userService; /** * Writes items via list * * @throws Exception * */ @Override public void write(List userList) throws Exception { for(User user : userList) { getUserService().addUser(user); } System.out.println("User List : " + getUserService().getUsers()); } public IUserService getUserService() { return userService; } public void setUserService(IUserService userService) { this.userService = userService; } } Step 13 : Create FailedStepTasklet Class FailedStepTasklet is created by implementing Tasklet Interface. It illustrates business logic in failed step. package com.onlinetechvision.tasklet; import org.apache.log4j.Logger; import org.springframework.batch.core.StepContribution; import org.springframework.batch.core.scope.context.ChunkContext; import org.springframework.batch.core.step.tasklet.Tasklet; import org.springframework.batch.repeat.RepeatStatus; /** * FailedStepTasklet Class illustrates a failed job. * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class FailedStepTasklet implements Tasklet { private static final Logger logger = Logger.getLogger(FailedStepTasklet.class); private String taskResult; /** * Executes FailedStepTasklet * * @param StepContribution stepContribution * @param ChunkContext chunkContext * @return RepeatStatus * @throws Exception * */ public RepeatStatus execute(StepContribution stepContribution, ChunkContext chunkContext) throws Exception { logger.debug("Task Result : " + getTaskResult()); throw new Exception("Error occurred!"); } public String getTaskResult() { return taskResult; } public void setTaskResult(String taskResult) { this.taskResult = taskResult; } } Step 14 : Create BatchProcessStarter Class BatchProcessStarter Class is created to launch the jobs. Also, it logs their execution results. package com.onlinetechvision.spring.batch; import org.apache.log4j.Logger; import org.springframework.batch.core.Job; import org.springframework.batch.core.JobExecution; import org.springframework.batch.core.JobParametersBuilder; import org.springframework.batch.core.JobParametersInvalidException; import org.springframework.batch.core.launch.JobLauncher; import org.springframework.batch.core.repository.JobExecutionAlreadyRunningException; import org.springframework.batch.core.repository.JobInstanceAlreadyCompleteException; import org.springframework.batch.core.repository.JobRepository; import org.springframework.batch.core.repository.JobRestartException; /** * BatchProcessStarter Class launches the jobs and logs their execution results. * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class BatchProcessStarter { private static final Logger logger = Logger.getLogger(BatchProcessStarter.class); private Job firstJob; private Job secondJob; private Job thirdJob; private JobLauncher jobLauncher; private JobRepository jobRepository; /** * Starts the jobs and logs their execution results. * */ public void start() { JobExecution jobExecution = null; JobParametersBuilder builder = new JobParametersBuilder(); try { getJobLauncher().run(getFirstJob(), builder.toJobParameters()); jobExecution = getJobRepository().getLastJobExecution(getFirstJob().getName(), builder.toJobParameters()); logger.debug(jobExecution.toString()); getJobLauncher().run(getSecondJob(), builder.toJobParameters()); jobExecution = getJobRepository().getLastJobExecution(getSecondJob().getName(), builder.toJobParameters()); logger.debug(jobExecution.toString()); getJobLauncher().run(getThirdJob(), builder.toJobParameters()); jobExecution = getJobRepository().getLastJobExecution(getThirdJob().getName(), builder.toJobParameters()); logger.debug(jobExecution.toString()); } catch (JobExecutionAlreadyRunningException | JobRestartException | JobInstanceAlreadyCompleteException | JobParametersInvalidException e) { logger.error(e); } } public Job getFirstJob() { return firstJob; } public void setFirstJob(Job firstJob) { this.firstJob = firstJob; } public Job getSecondJob() { return secondJob; } public void setSecondJob(Job secondJob) { this.secondJob = secondJob; } public Job getThirdJob() { return thirdJob; } public void setThirdJob(Job thirdJob) { this.thirdJob = thirdJob; } public JobLauncher getJobLauncher() { return jobLauncher; } public void setJobLauncher(JobLauncher jobLauncher) { this.jobLauncher = jobLauncher; } public JobRepository getJobRepository() { return jobRepository; } public void setJobRepository(JobRepository jobRepository) { this.jobRepository = jobRepository; } } Step 15 : Create dataContext.xml jdbc.properties, is created. It defines data-source informations and is read via dataContext.xml jdbc.db.driverClassName=com.mysql.jdbc.Driver jdbc.db.url=jdbc:mysql://localhost:3306/onlinetechvision jdbc.db.username=root jdbc.db.password=root jdbc.db.initialSize=10 jdbc.db.minIdle=3 jdbc.db.maxIdle=10 jdbc.db.maxActive=10 jdbc.db.testWhileIdle=true jdbc.db.testOnBorrow=true jdbc.db.testOnReturn=true jdbc.db.initSQL=SELECT 1 FROM DUAL jdbc.db.validationQuery=SELECT 1 FROM DUAL jdbc.db.timeBetweenEvictionRunsMillis=30000 Step 16 : Create dataContext.xml Spring Configuration file, dataContext.xml, is created. It covers dataSource, sessionFactory and transactionManager definitions. com.onlinetechvision.user.User org.hibernate.dialect.MySQLDialect true Step 17 : Create jobContext.xml Spring Configuration file, jobContext.xml, is created. It covers jobRepository, jobLauncher, item reader, item processor, item writer, tasklet and job definitions. Step 18 : Create applicationContext.xml Spring Configuration file, applicationContext.xml, is created. It covers bean definitions. Step 19 : Create Application Class Application Class is created to run the application. package com.onlinetechvision.exe; import org.springframework.context.ApplicationContext; import org.springframework.context.support.ClassPathXmlApplicationContext; import com.onlinetechvision.spring.batch.BatchProcessStarter; /** * Application Class starts the application. * * @author onlinetechvision.com * @since 10 Dec 2012 * @version 1.0.0 * */ public class Application { /** * Starts the application * * @param String[] args * */ public static void main(String[] args) { ApplicationContext appContext = new ClassPathXmlApplicationContext("applicationContext.xml"); BatchProcessStarter batchProcessStarter = (BatchProcessStarter)appContext.getBean("batchProcessStarter"); batchProcessStarter.start(); } } Step 20 : Build Project After OTV_SpringBatch_Chunk_Oriented_Processing Project is built, OTV_SpringBatch_Chunk_Oriented_Processing-0.0.1-SNAPSHOT.jar will be created. STEP 21 : RUN PROJECT After created OTV_SpringBatch_Chunk_Oriented_Processing-0.0.1-SNAPSHOT.jar file is run, the following database and console output logs will be shown : Database screenshot : First Job’ s console output : 16.12.2012 19:30:41 INFO (SimpleJobLauncher.java:118) - Job: [FlowJob: [name=firstJob]] launched with the following parameters: [{}] 16.12.2012 19:30:41 DEBUG (AbstractJob.java:278) - Job execution starting: JobExecution: id=0, version=0, startTime=null, endTime=null, lastUpdated=Sun Dec 16 19:30:41 GMT 2012, status=STARTING, exitStatus=exitCode=UNKNOWN;exitDescription=, job=[JobInstance: id=0, version=0, JobParameters=[{}], Job=[firstJob]] User List : [id : 181, name : FIRSTNAME_0, surname : FIRSTSURNAME_0, id : 182, name : FIRSTNAME_1, surname : FIRSTSURNAME_1, id : 183, name : FIRSTNAME_2, surname : FIRSTSURNAME_2, id : 184, name : SECONDNAME_0, surname : SECONDSURNAME_0, id : 185, name : SECONDNAME_1, surname : SECONDSURNAME_1, id : 186, name : SECONDNAME_2, surname : SECONDSURNAME_2] 16.12.2012 19:30:42 DEBUG (BatchProcessStarter.java:43) - JobExecution: id=0, version=2, startTime=Sun Dec 16 19:30:41 GMT 2012, endTime=Sun Dec 16 19:30:42 GMT 2012, lastUpdated=Sun Dec 16 19:30:42 GMT 2012, status=COMPLETED, exitStatus=exitCode=COMPLETED;exitDescription=, job=[JobInstance: id=0, version=0, JobParameters=[{}], Job=[firstJob]] Second Job’ s console output : 16.12.2012 19:30:42 INFO (SimpleJobLauncher.java:118) - Job: [FlowJob: [name=secondJob]] launched with the following parameters: [{}] 16.12.2012 19:30:42 DEBUG (AbstractJob.java:278) - Job execution starting: JobExecution: id=1, version=0, startTime=null, endTime=null, lastUpdated=Sun Dec 16 19:30:42 GMT 2012, status=STARTING, exitStatus=exitCode=UNKNOWN;exitDescription=, job=[JobInstance: id=1, version=0, JobParameters=[{}], Job=[secondJob]] User List : [id : 181, name : FIRSTNAME_0, surname : FIRSTSURNAME_0, id : 182, name : FIRSTNAME_1, surname : FIRSTSURNAME_1, id : 183, name : FIRSTNAME_2, surname : FIRSTSURNAME_2, id : 184, name : SECONDNAME_0, surname : SECONDSURNAME_0, id : 185, name : SECONDNAME_1, surname : SECONDSURNAME_1, id : 186, name : SECONDNAME_2, surname : SECONDSURNAME_2, id : 187, name : THIRDNAME_0, surname : THIRDSURNAME_0, id : 188, name : THIRDNAME_1, surname : THIRDSURNAME_1, id : 189, name : THIRDNAME_2, surname : THIRDSURNAME_2, id : 190, name : THIRDNAME_3, surname : THIRDSURNAME_3, id : 191, name : FOURTHNAME_0, surname : FOURTHSURNAME_0, id : 192, name : FOURTHNAME_1, surname : FOURTHSURNAME_1, id : 193, name : FOURTHNAME_2, surname : FOURTHSURNAME_2, id : 194, name : FOURTHNAME_3, surname : FOURTHSURNAME_3] 16.12.2012 19:30:42 DEBUG (BatchProcessStarter.java:47) - JobExecution: id=1, version=2, startTime=Sun Dec 16 19:30:42 GMT 2012, endTime=Sun Dec 16 19:30:42 GMT 2012, lastUpdated=Sun Dec 16 19:30:42 GMT 2012, status=COMPLETED, exitStatus=exitCode=COMPLETED;exitDescription=, job=[JobInstance: id=1, version=0, JobParameters=[{}], Job=[secondJob]] Third Job’ s console output : 16.12.2012 19:30:42 INFO (SimpleJobLauncher.java:118) - Job: [FlowJob: [name=thirdJob]] launched with the following parameters: [{}] 16.12.2012 19:30:42 DEBUG (AbstractJob.java:278) - Job execution starting: JobExecution: id=2, version=0, startTime=null, endTime=null, lastUpdated=Sun Dec 16 19:30:42 GMT 2012, status=STARTING, exitStatus=exitCode=UNKNOWN;exitDescription=, job=[JobInstance: id=2, version=0, JobParameters=[{}], Job=[thirdJob]] 16.12.2012 19:30:42 DEBUG (TransactionTemplate.java:159) - Initiating transaction rollback on application exception org.springframework.batch.repeat.RepeatException: Exception in batch process; nested exception is java.lang.Exception: Unexpected Error! ... 16.12.2012 19:30:43 DEBUG (BatchProcessStarter.java:51) - JobExecution: id=2, version=2, startTime=Sun Dec 16 19:30:42 GMT 2012, endTime=Sun Dec 16 19:30:43 GMT 2012, lastUpdated=Sun Dec 16 19:30:43 GMT 2012, status=FAILED, exitStatus=exitCode=FAILED;exitDescription=, job=[JobInstance: id=2, version=0, JobParameters=[{}], Job=[thirdJob]] Step 22 : Download https://github.com/erenavsarogullari/OTV_SpringBatch_Chunk_Oriented_Processing REFERENCES : Chunk Oriented Processing in Spring Batch
January 3, 2013
by Eren Avsarogullari
· 153,259 Views · 7 Likes
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JAXB - Representing Null and Empty Collections
In this post I will cover how to differentiate between null and empty collections in the XML representation with JAXB (JSR-222). Demo Code The following demo code will be used for all the different versions of the Java model. It simply sets one collection to null, the second to an empty list, and the third to a populated list. package blog.xmlelementwrapper; import java.util.ArrayList; import javax.xml.bind.*; public class Demo { public static void main(String[] args) throws Exception { JAXBContext jc = JAXBContext.newInstance(Root.class); Root root = new Root(); root.nullCollection = null; root.emptyCollection = new ArrayList(); root.populatedCollection = new ArrayList(); root.populatedCollection.add("foo"); root.populatedCollection.add("bar"); Marshaller marshaller = jc.createMarshaller(); marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true); marshaller.marshal(root, System.out); } } Mapping #1 - Default JAXB models do not require any annotations (see JAXB - No Annotations Required). First we will look at what the default behaviour is for collection properties. package blog.xmlelementwrapper; import java.util.List; import javax.xml.bind.annotation.*; @XmlRootElement @XmlAccessorType(XmlAccessType.FIELD) public class Root { List nullCollection; List emptyCollection; List populatedCollection; } Examining the output we see that the output corresponding to the nullCollection and emptyCollection fields is the same. This means with the default mapping we can't round trip the instance. For the unmarshal use case the value of the nullCollection and emptyCollection the value of the fields will be whatever the class initialized them to (null in this case). foo bar Mapping #2 - @XmlElementWrapper The @XmlElementWrapper annotation is used to add a grouping element around the contents of a collection. In addition to changing the appearance of the XML representation it also allows us to distinguish between null and empty collections. package blog.xmlelementwrapper; import java.util.List; import javax.xml.bind.annotation.*; @XmlRootElement @XmlAccessorType(XmlAccessType.FIELD) public class Root { @XmlElementWrapper List nullCollection; @XmlElementWrapper List emptyCollection; @XmlElementWrapper List populatedCollection; } The representation for the null collection remains the same, it is absent from the XML document. For an empty collection we see that only the grouping element is marshalled out. Since the representations for null and empty are different we can round trip this use case. foo bar Mapping #3 - @XmlElementWrapper(nillable=true) The nillable property on the @XmlElementWrapper annotation can be used to change the XML representation of null collections. package blog.xmlelementwrapper; import java.util.List; import javax.xml.bind.annotation.*; @XmlRootElement @XmlAccessorType(XmlAccessType.FIELD) public class Root { @XmlElementWrapper(nillable=true) List nullCollection; @XmlElementWrapper(nillable=true) List emptyCollection; @XmlElementWrapper(nillable=true) List populatedCollection; } Now the grouping element is present for all three fields. The xsi:nil attribute is used to indicate that the nullCollection field was null. Like the previous mapping this one can be round tripped. foo bar
January 3, 2013
by Blaise Doughan
· 52,493 Views
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HtmlUnit vs JSoup: HTML Parsing in Java
in continuation of my earlier blog jsoup: nice way to do html parsing in java, in this blog i will compare jsoup with other similar framework, htmlunit . apparently both of them are good html parsing frameworks and both can be used for web application unit testing and web scraping. in this blog, i will explain how htmlunit is better suited for web application unit testing automation and jsoup is better suited for web scraping. typically web application unit testing automation is a way to automate webtesting in junit framework. and web scraping is a way to extract unstructured information from the web to a structured format. i recently tried 2 decent web scraping tools, webharvy and mozenda . for any good html parsing tools to click, they should support either xpath based or css selector based element access. there are lot of blogs comparing each one like, why css locators are the way to go vs xpath , and css selectors and xpath expressions . htmlunit htmlunit is a powerful framework, where you can simulate pretty much anything a browser can do like click events, submit events etc and is ideal for web application automated unit testing. xpath based parsing is simple and most popular and htmlunit is heavily based on this. in one of my application, i wanted to extract information from the web in a structured way. htmlunit worked out very well for me on this. but the problem starts when you try to extract structured data from modern web applications that use jquery and other ajax features and use div tags extensively. htmlunit and other xpath based html parsers will not work with this. there is also a jsoup version that supports xpath based on jaxe n, i tried this as well, guess what? it also was not able to access the data from modern web applications like ebay.com. finally my experience with htmlunit was it was bit buggy or maybe i call it unforgiving unlike a browser, where in if the target web applications have missing javascripts, it will throw exceptions, but we can get around this, but out of the box it will not work. jsoup the latest version of jsoup goes extra length not to support xpath and will very well support css selectors . my experience was it is excellent for extracting structured data from modern web applications. it is also far forgiving if the web application has some missing javascripts. extracting xpath and css selector data in most of the browsers, if you point to an element and right click and click on “inspect element” it can extract the xpath information, i noticed firefox/firebug can also extract css selector path as shown below, htmlunit vs jsoup: extract css path and xpath in firebug i hope this blog helped.
January 3, 2013
by Krishna Prasad
· 38,410 Views · 2 Likes
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Auditing Login Attempts in MySQL
This is a recurring question made by our MySQL Support customers: How can I audit the login attempts in MySQL? Logging all the attempts or just the failed ones is a very important task on some scenarios. Unfortunately there are not too many audit capabilities in MySQL Community so the first option to audit MySQL’s authentication process is to get all the information we need from logs. General Query Log The first option is the General Query Log. Let’s see an example: Enable the log: general_log_file = /var/log/mysql/mysql.log general_log = 1 User correctly authenticated: 121227 8:31:49 38 Connect root@localhost on 38 Query select @@version_comment limit 1 User not correctly authenticated: 121227 8:32:18 39 Connect root@localhost on 39 Connect Access denied for user 'root'@'localhost' (using password: YES) The problem of the General Query Log is that it will log everything so it can cause performance degradation and you will have to deal with very large files on high loaded servers. general_log variable is dynamic so a solution could be enabling and disabling the log just when it’s needed. Error log If you only care about failed attempts to login then there is another different and less problematic approach. From 5.5 it’s possible to log access denied messages to the error log. We just need to enable log_warnings with a value greater than 1: log_warnings = 2 Then check the error log: 121227 8:44:21 [Warning] Access denied for user 'root'@'localhost' (using password: YES) User Statistics If you are using Percona Server then there is a third option to get information about our users, the User Statistics. As with the previous options we can get the number of connections and failed connections made by a particular user but not the date and time of those attempts. Besides that information we can get other statistics that can be very useful if MySQL is running on a multi-tenant environment or we need to control how resources are used. Let’s seen an example, first we enable User Statistics in my.cnf: 5.5 userstat = 1 5.1 userstat_running = 1 Then we get the information about a particular user: mysql> select * from user_statistics where user='root'\G *************************** 1. row *************************** USER: root TOTAL_CONNECTIONS: 25 CONCURRENT_CONNECTIONS: 0 CONNECTED_TIME: 464 BUSY_TIME: 96 CPU_TIME: 19 BYTES_RECEIVED: 62869617 BYTES_SENT: 14520 BINLOG_BYTES_WRITTEN: 0 ROWS_FETCHED: 783051 ROWS_UPDATED: 1017714 TABLE_ROWS_READ: 1484751 SELECT_COMMANDS: 14 UPDATE_COMMANDS: 103 OTHER_COMMANDS: 3556 COMMIT_TRANSACTIONS: 0 ROLLBACK_TRANSACTIONS: 0 DENIED_CONNECTIONS: 2 LOST_CONNECTIONS: 16 ACCESS_DENIED: 0 EMPTY_QUERIES: 0 TOTAL_SSL_CONNECTIONS: 0 Here we can see that root has done 25 total connections. Two denied connections (bad password) and 16 lost connections (not closed properly). Apart from that information we get the connection time, bytes received and sent, rows accessed, commands executed and so on. Very valuable information. It is important to mention that these tables are stored in INFORMATION_SCHEMA and that means that after a mysqld restart all the information will be lost. So if you really need that information you should copy it to another table or export to a csv for further analysis. Conclusion We don’t have too many audit capabilities in MySQL Community so logging all events and then filter them with custom-made scripts is the best solution we have nowadays. If you are using Percona Server you can get more detailed information about what a particular user is doing. All options can be combined to meet your needs.
January 2, 2013
by Peter Zaitsev
· 18,165 Views
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JAXB's @XmlAnyElement(lax=true) Explained
In a previous post I introduced how the @XmlAnyElement(lax=true) annotation could be used to create a very flexible mapping. In this post I'll dig a bit deeper into how it relates to both the @XmlRootElement and @XmlElementDecl. @XmlAnyElement (Root) The any field is annotated with @XmlAnyElement(lax=true). This means that for that field if an element is associated with a class via @XmlRootElement or @XmlElementDecl then an instance of the corresponding class will be used to populate the field if not the element will be set as an instance of org.w3c.dom.Element. package blog.anyelement; import java.util.List; import javax.xml.bind.annotation.*; @XmlRootElement @XmlAccessorType(XmlAccessType.FIELD) public class Root { @XmlAnyElement(lax = true) protected List createBar(Bar bar) { return new JAXBElement(new QName("bar"), Bar.class, bar); } } Input (input.xml) Below is the input document we'll use for this example. There are 3 elements that correspond to the any property. The first corresponds to the @XmlRootElement annotation on the Foo class. The second corresponds to the @XmlElementDecl annotation for the Bar class and the third does not correspond to any of the domain classes. Hello World A B Demo In the demo code below we will unmarshal the input document, then output the classes of the objects in the resulting any property and then marshal the payload object back to XML. package blog.anyelement; import java.io.File; import javax.xml.bind.*; public class Demo { public static void main(String[] args) throws Exception { JAXBContext jc = JAXBContext.newInstance(Root.class, Foo.class, ObjectFactory.class); Unmarshaller unmarshaller = jc.createUnmarshaller(); File xml = new File("src/blog/anyelement/input.xml"); Root payload = (Root) unmarshaller.unmarshal(xml); for(Object o : payload.any) { System.out.println(o.getClass()); } Marshaller marshaller = jc.createMarshaller(); marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true); marshaller.marshal(payload, System.out); } } Output Below is the output from running the demo code. Note the classes corresponding to the objects in the any property. The foo element became an instance of the Foo class. The bar element became an instance of JAXBElement that holds an instance of Bar. The other element became an instance of org.w3c.dom.Element. class blog.anyelement.Foo class javax.xml.bind.JAXBElement class com.sun.org.apache.xerces.internal.dom.ElementNSImpl Hello World A B
January 2, 2013
by Blaise Doughan
· 51,404 Views · 15 Likes
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How to Un-install a Plugin From Eclipse / STS?
It is easy to do - a few button clicks (generally) - but the button location is damn unintuitive. So, this is what you have got to do Go to "Help" menu item. Click on "About ..." button (why on earth should I click that when I am trying to un-install a plugin. By the way, the menu item just above "About ..." is "Install New Software ...". Would it have been too much pain to have a "Manage plugins" and / or "Un-install plugins" right underneath it?) A form opens up. At the bottom of it there is button "Installation details". Click that. (Again, why on earth would anyone think "Installation details" would have anything to do with un-installing stuff. I would have expected only a static display of stuff that are already installed.) Another multi tabbed form opens up (Anyone keeping count of the number of windows opened already. This is the 3rd window by now, including the parent editor window) which shows all the installed plugins. If you select any of the installed plugins, a button to "uninstall" becomes available. Click that and you should be able to un-install and after a restart everything should be fine. My interest in software and IT has always been much more than a 9 to 5 job (and I am sure there is a huge population that it holds equally true for). I have always wanted software to be efficient and beautiful apart from doing it's job. However, it took an excellent session on usability (which I joined only with casual curiosity but left with renewed interest in the subject and admiration for David Travis who delivered the course) to get me to start looking at all software with an "user's" perspective. And I was surprised with what I found and how it changed my coding. I have been using Eclipse and STS for years now (nearing a decade now) and I absolutely love these software. However when you start looking at them as a "user" and not only as a developer, there are quite a few usability opportunities of improvement that meets the eye. This article - apart from helping folks looking to un-install plugins in Eclipse - is also intended at folks who design Eclipse - just a humble request to consider this also as a usability improvement.
January 1, 2013
by Partha Bhattacharjee
· 16,227 Views
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UML2 Class Diagram in Java
Learn all about this Unified Modeling Language diagram in Java.
December 31, 2012
by Mainak Goswami
· 200,507 Views · 10 Likes
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Java Thread: retained memory analysis
This article will provide you with a tutorial allowing you to determine how much and where Java heap space is retained from your active application Java threads. A true case study from an Oracle Weblogic 10.0 production environment will be presented in order for you to better understand the analysis process. We will also attempt to demonstrate that excessive garbage collection or Java heap space memory footprint problems are often not caused by true memory leaks but instead due to thread execution patterns and high amount of short lived objects. Background As you may have seen from my past JVM overview article, Java threads are part of the JVM fundamentals. Your Java heap space memory footprint is driven not only by static and long lived objects but also by short lived objects. OutOfMemoryError problems are often wrongly assumed to be due to memory leaks. We often overlook faulty thread execution patterns and short lived objects they “retain” on the Java heap until their executions are completed. In this problematic scenario: Your “expected” application short lived / stateless objects (XML, JSON data payload etc.) become retained by the threads for too long (thread lock contention, huge data payload, slow response time from remote system etc.) Eventually such short lived objects get promoted to the long lived object space e.g. OldGen/tenured space by the garbage collector As a side effect, this is causing the OldGen space to fill up rapidly, increasing the Full GC (major collections) frequency Depending of the severity of the situation this can lead to excessive GC garbage collection, increased JVM paused time and ultimately OutOfMemoryError: Java heap space Your application is now down, you are now puzzled on what is going on Finally, you are thinking to either increase the Java heap or look for memory leaks…are you really on the right track? In the above scenario, you need to look at the thread execution patterns and determine how much memory each of them retain at a given time. OK I get the picture but what about the thread stack size? It is very important to avoid any confusion between thread stack size and Java memory retention. The thread stack size is a special memory space used by the JVM to store each method call. When a thread calls method A, it “pushes” the call onto the stack. If method A calls method B, it gets also pushed onto the stack. Once the method execution completes, the call is “popped” off the stack. The Java objects created as a result of such thread method calls are allocated on the Java heap space. Increasing the thread stack size will definitely not have any effect. Tuning of the thread stack size is normally required when dealing with java.lang.stackoverflowerror or OutOfMemoryError: unable to create new native thread problems. Case study and problem context The following analysis is based on a true production problem we investigated recently. Severe performance degradation was observed from a Weblogic 10.0 production environment following some changes to the user web interface (using Google Web Toolkit and JSON as data payload) Initial analysis did reveal several occurrences of OutOfMemoryError: Java heap space errors along with excessive garbage collection. Java heap dump files were generated automatically (-XX:+HeapDumpOnOutOfMemoryError) following OOM events Analysis of the verbose:gc logs did confirm full depletion of the 32-bit HotSpot JVM OldGen space (1 GB capacity) Thread dump snapshots were also generated before and during the problem The only problem mitigation available at that time was to restart the affected Weblogic server when problem was observed A rollback of the changes was eventually performed which did resolve the situation The team first suspected a memory leak problem from the new code introduced. Thread dump analysis: looking for suspects… The first analysis step we did was to perform an analysis of the generated thread dump data. Thread dump will often show you the culprit threads allocating memory on the Java heap. It will also reveal any hogging or stuck thread attempting to send and receive data payload from a remote system. The first pattern we noticed was a good correlation between OOM events and STUCK threads observed from the Weblogic managed servers (JVM processes). Find below the primary thread pattern found: <10-Dec-2012 1:27:59 o'clock PM EST> <[STUCK] ExecuteThread: '22' for queue: 'weblogic.kernel.Default (self-tuning)' has been busy for "672" seconds working on the request which is more than the configured time of "600" seconds. As you can see, the above thread appears to be STUCK or taking very long time to read and receive the JSON response from the remote server. Once we found that pattern, the next step was to correlate this finding with the JVM heap dump analysis and determine how much memory these stuck threads were taking from the Java heap. Heap dump analysis: retained objects exposed! The Java heap dump analysis was performed using MAT. We will now list the different analysis steps which did allow us to pinpoint the retained memory size and source. 1. Load the HotSpot JVM heap dump 2. Select the HISTOGRAM view and filter by “ExecuteThread” * ExecuteThread is the Java class used by the Weblogic kernel for thread creation & execution * As you can see, this view was quite revealing. We can see a total of 210 Weblogic threads created. The total retained memory footprint from these threads is 806 MB. This is pretty significant for a 32-bit JVM process with 1 GB OldGen space. This view alone is telling us that the core of the problem and memory retention originates from the threads themselves. 3. Deep dive into the thread memory footprint analysis The next step was to deep dive into the thread memory retention. To do this, simply right click over the ExecuteThread class and select: List objects > with outgoing references. As you can see, we were able to correlate STUCK threads from the thread dump analysis with high memory retention from the heap dump analysis. The finding was quite surprising. 3. Thread Java Local variables identification The final analysis step did require us to expand a few thread samples and understand the primary source of memory retention. As you can see, this last analysis step did reveal huge JSON response data payload at the root cause. That pattern was also exposed earlier via the thread dump analysis where we found a few threads taking very long time to read & receive the JSON response; a clear symptom of huge data payload footprint. It is crucial to note that short lived objects created via local method variables will show up in the heap dump analysis. However, some of those will only be visible from their parent threads since they are not referenced by other objects, like in this case. You will also need to analyze the thread stack trace in order to identify the true caller, followed by a code review to confirm the root cause. Following this finding, our delivery team was able to determine that the recent JSON faulty code changes were generating, under some scenarios, huge JSON data payload up to 45 MB+. Given the fact that this environment is using a 32-bit JVM with only 1 GB of OldGen space, you can understand that only a few threads were enough to trigger severe performance degradation. This case study is clearly showing the importance of proper capacity planning and Java heap analysis, including the memory retained from your active application & Java EE container threads. Learning is experience. Everything else is just information I hope this article has helped you understand how you can pinpoint the Java heap memory footprint retained by your active threads by combining thread dump and heap dump analysis. Now, this article will remain just words if you don’t experiment so I highly recommend that you take some time to learn this analysis process yourself for your application(s). Please feel free to post any comment or question.
December 30, 2012
by Pierre - Hugues Charbonneau
· 27,817 Views · 3 Likes
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Google Guava Cache with regular expression patterns
Hi! Merry Christmas everyone :) Quite recently I've seen a nice presentation about Google Guava and we came to the conclusion in our project that it could be really interesting to use the its Cache functionallity. Let us take a look at the regexp Pattern class and its compile function. Quite often in the code we can see that each time a regular expression is being used a programmer is repeatidly calling the aforementioned Pattern.compile() function with the same argument thus compiling the same regular expression over and over again. What could be done however is to cache the result of such compilations - let us take a look at the RegexpUtils utility class: RegexpUtils.java package pl.grzejszczak.marcin.guava.cache.utils; import com.google.common.cache.CacheBuilder; import com.google.common.cache.CacheLoader; import com.google.common.cache.LoadingCache; import java.util.concurrent.ExecutionException; import java.util.regex.Matcher; import java.util.regex.Pattern; import static java.lang.String.format; public final class RegexpUtils { private RegexpUtils() { throw new UnsupportedOperationException("RegexpUtils is a utility class - don't instantiate it!"); } private static final LoadingCache COMPILED_PATTERNS = CacheBuilder.newBuilder().build(new CacheLoader() { @Override public Pattern load(String regexp) throws Exception { return Pattern.compile(regexp); } }); public static Pattern getPattern(String regexp) { try { return COMPILED_PATTERNS.get(regexp); } catch (ExecutionException e) { throw new RuntimeException(format("Error when getting a pattern [%s] from cache", regexp), e); } } public static boolean matches(String stringToCheck, String regexp) { return doGetMatcher(stringToCheck, regexp).matches(); } public static Matcher getMatcher(String stringToCheck, String regexp) { return doGetMatcher(stringToCheck, regexp); } private static Matcher doGetMatcher(String stringToCheck, String regexp) { Pattern pattern = getPattern(regexp); return pattern.matcher(stringToCheck); } } As you can see the Guava's LoadingCache with the CacheBuilder is being used to populate a cache with a new compiled pattern if one is not found. Due to caching the compiled pattern if a compilation has already taken place it will not be repeated ever again (in our case since we dno't have any expiry set). Now a simple test GuavaCache.java package pl.grzejszczak.marcin.guava.cache; import com.google.common.base.Stopwatch; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import pl.grzejszczak.marcin.guava.cache.utils.RegexpUtils; import java.util.regex.Pattern; import static java.lang.String.format; public class GuavaCache { private static final Logger LOGGER = LoggerFactory.getLogger(GuavaCache.class); public static final String STRING_TO_MATCH = "something"; public static void main(String[] args) { runTestForManualCompilationAndOneUsingCache(1); runTestForManualCompilationAndOneUsingCache(10); runTestForManualCompilationAndOneUsingCache(100); runTestForManualCompilationAndOneUsingCache(1000); runTestForManualCompilationAndOneUsingCache(10000); runTestForManualCompilationAndOneUsingCache(100000); runTestForManualCompilationAndOneUsingCache(1000000); } private static void runTestForManualCompilationAndOneUsingCache(int firstNoOfRepetitions) { repeatManualCompilation(firstNoOfRepetitions); repeatCompilationWithCache(firstNoOfRepetitions); } private static void repeatManualCompilation(int noOfRepetitions) { Stopwatch stopwatch = new Stopwatch().start(); compileAndMatchPatternManually(noOfRepetitions); LOGGER.debug(format("Time needed to compile and check regexp expression [%d] ms, no of iterations [%d]", stopwatch.elapsedMillis(), noOfRepetitions)); } private static void repeatCompilationWithCache(int noOfRepetitions) { Stopwatch stopwatch = new Stopwatch().start(); compileAndMatchPatternUsingCache(noOfRepetitions); LOGGER.debug(format("Time needed to compile and check regexp expression using Cache [%d] ms, no of iterations [%d]", stopwatch.elapsedMillis(), noOfRepetitions)); } private static void compileAndMatchPatternManually(int limit) { for (int i = 0; i < limit; i++) { Pattern.compile("something").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something1").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something2").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something3").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something4").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something5").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something6").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something7").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something8").matcher(STRING_TO_MATCH).matches(); Pattern.compile("something9").matcher(STRING_TO_MATCH).matches(); } } private static void compileAndMatchPatternUsingCache(int limit) { for (int i = 0; i < limit; i++) { RegexpUtils.matches(STRING_TO_MATCH, "something"); RegexpUtils.matches(STRING_TO_MATCH, "something1"); RegexpUtils.matches(STRING_TO_MATCH, "something2"); RegexpUtils.matches(STRING_TO_MATCH, "something3"); RegexpUtils.matches(STRING_TO_MATCH, "something4"); RegexpUtils.matches(STRING_TO_MATCH, "something5"); RegexpUtils.matches(STRING_TO_MATCH, "something6"); RegexpUtils.matches(STRING_TO_MATCH, "something7"); RegexpUtils.matches(STRING_TO_MATCH, "something8"); RegexpUtils.matches(STRING_TO_MATCH, "something9"); } } } We are running a series of tests and checking the time of their execution. Note that the results of these tests are not precise due to the fact that the application is not being run in isolation so numerous conditions can affect the time of the execution. We are interested in showing some degree of the problem rather than showing the precise execution time. For a given number of iterations (1,10,100,1000,10000,100000,1000000) we are either compiling 10 regular expressions or using a Guava's cache to retrieve the compiled Pattern and then we match them against a string to match. These are the logs: pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [1] ms, no of iterations [1] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [35] ms, no of iterations [1] pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [1] ms, no of iterations [10] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [0] ms, no of iterations [10] pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [8] ms, no of iterations [100] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [3] ms, no of iterations [100] pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [10] ms, no of iterations [1000] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [10] ms, no of iterations [1000] pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [83] ms, no of iterations [10000] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [33] ms, no of iterations [10000] pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [800] ms, no of iterations [100000] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [279] ms, no of iterations [100000] pl.grzejszczak.marcin.guava.cache.GuavaCache:34 Time needed to compile and check regexp expression [7562] ms, no of iterations [1000000] pl.grzejszczak.marcin.guava.cache.GuavaCache:40 Time needed to compile and check regexp expression using Cache [3067] ms, no of iterations [1000000] You can find the sources over here under the Guava/Cache directory or go to the url https://bitbucket.org/gregorin1987/too-much-coding/src
December 28, 2012
by Marcin Grzejszczak
· 9,231 Views
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MongoDB and the Concept of Identity in NoSQL Databases
in this article i deal with a different nosql database called mongodb a mature nosql engine born outside the .net world to clarify the concept of id in a typical no sql database. installation of mongo is really simple, just download, uncompress, locate the bin folder, and type this from an administrator console prompt to install mongo as service 1: mongod --install --logpath c:xxxx --dbpath c:yyyy you can find plenty of installation guide on the internet, but with the above install command you create a windows service that will automatically start mongodb on your machine using specified datafolder. now you should download the c# driver to connect from .net code, but if you like using linq you can install fluent mongo directly with nuget. figure 1: install fluent mongo with nuget. fluent mongo is a library that gave little linq capability over standard drivers, but adding a nuget reference to fluentmongo you get automatically a reference to the official drivers. now you are ready to insert your first record in mongodb with the above code. mongoserver server = mongoserver.create(); mongodatabase databasetest = server.getdatabase("test"); var untyped = databasetest.getcollection("untyped"); untyped.save(new bsondocument { { "name", "untyped1" } }); bsondocument seconddocument = bsondocument.parse("{name: 'untyped2', blabla: 'bla bla value'}"); untyped.save(seconddocument); in line1 i create a connection to mongodb server passing no parameter to connect to local mongodb server, then i obtain a reference to a mongodatabase object called “test” with mongoserver::getdatabase() method and finally i get a reference to a collection named “untyped” with the mongngodatabase::getcollection () method. this is quite similar to a sql server or other sql database, you have a server, the server contains several databases, and each database is composed by tables; in the same way mongo is divided into server/database/collection where a collection contains document. mongodb stores data in json format and to insert data inside a collection you can simply create a bsondocument, an object defined by c# driver assembly that is capable to represent a document composed by a series of key-value pair. to initialize a bsondocument you can pass a icollection (line 4) or if you feel more confortable with string json representation, you can user bsondocument.parse() to specify the document directly with a json string. after you inserted the above documents you can use mongovue to see what is contained inside the database. figure 2: use mongovue to see what is inside the database the interesting aspect is that each document has an unique id, even if i did not specified any special property in the code. this is a standard behavior for nosql databases, if you did not specify any id property the database engine will create unique id on his own to idendify the docuemnt. the id is a key factor for mongo and other nosql storage, if you try to store a document directly inside the collection specifying json content you will get an error. untyped.save("{name: 'json', attribute:'attribute content'}"); the mongocollection object contains a save object that accepts a string, but the above call will fail with the error subclass must implement getdocumentid . previous code works because one of the specific functionality that a bsondocument implements is the ability to manage id generation, but plain json does not have this capability. if you need to know the id generated by the database, you can query the bsondocument for its unique id after it was saved in a mongo collection . (remember that the id is not available until you save the document). bsondocument seconddocument = bsondocument.parse("{name: 'untyped2', blabla: 'bla bla value'}"); object id; type idtype; iidgenerator generator; untyped.save(seconddocument); seconddocument.getdocumentid(out id, out idtype, out generator); basically you are asking to your bsondocument to return you the generated id, as well as the type of the id and the generator that mongo used to generate that specific id. the result is represented into this snippet figure 3: the three object that you got with a call to getdocumentid: id, idtype and the generator. as you can see the id is an instance of type mongodb.bson.objectid, based on bsonvalue base class and the generator is an instance of objectidgenerator. this type of id is specific to mongo, and the documentation states that an objectid is a bson objectid is a 12-byte value consisting of a 4-byte timestamp (seconds since epoch), a 3-byte machine id, a 2-byte process id, and a 3-byte counter. note that the timestamp and counter fields must be stored big endian unlike the rest of bson. this is because they are compared byte-by-byte and we want to ensure a mostly increasing order. if you want to have a generator that creates integer id, like identity column in sql server , you will find that it is simply not available out of the box, because an int value is not guarantee to be unique if you use sharding. sharding is a technique that permits to partition data into different physical instances, so each instance should generates ids that are unique across all instances and this prevents the use of a simple int32 id. clearly in .net world a guid is guarantee to be unique and is more .net oriented, so mongo db has a guid id generator, that can be specified with the above snippet of code.. bsondocument thirddocument = bsondocument.parse("{name: 'untyped3', anotherproperty: 'xxxxxxxxxxxxxxxxxxxxxxx'}"); var id2 = mongodb.bson.serialization.idgenerators.guidgenerator.instance.generateid(untyped, thirddocument); thirddocument.setdocumentid(id2); the key is using the guidgenerator (in the mongodb.bson.serialization.idgenerators namespace) to generate a valid mongoid guid value, then call the setdocumentid method of bsondocument to manually set the id and not relay on automatic id generation. if you look at the db you will find that the document with guid id has really a different id type. figure 4: the document with guid id is represented in a different way in mongovue, but as you can verify there is no problem in having documents with different id types in the same collection. this demonstrates that a no sql database has a concept of document id that is similar to the concept of id of a standard sql server, you can use a native id generation of the engine that generates a valid id during insertion or you can assign your own id to the document, but basically the whole concept of id is more engine-related and has no business meaning, so i strongly discourage to use anything that has a business meaning as id of a document. noone prevents you to insert in the document a property called “myid” or something else that has a business meaning and can be used as logical id and let the engine handle the internal id by itself.
December 26, 2012
by Ricci Gian Maria
· 8,235 Views
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Groovy JDK (GDK): Date and Calendar
Take a look at the date and calendar extensions in Groovy JDK.
December 20, 2012
by Dustin Marx
· 22,080 Views · 1 Like
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Devoxx 2012: Java 8 Lambda and Parallelism, Part 1
Overview Devoxx, the biggest vendor-independent Java conference in the world, took place in Atwerp, Belgium on 12 - 16 November. This year it was bigger yet, reaching 3400 attendees from 40 different countries. As last year, I and a small group of colleagues from SAP were there and enjoyed it a lot. After the impressive dance of Nao robots and the opening keynotes, more than 200 conference sessions explored a variety of different technology areas, ranging from Java SE to methodology and robotics. One of the most interesting topics for me was the evolution of the Java language and platform in JDK 8. My interest was driven partly by the fact that I was already starting work on Wordcounter, and finishing work on another concurrent Java library named Evictor, about which I will be blogging in a future post. In this blog series, I would like to share somewhat more detailed summaries of the sessions on this topic which I attended. These three sessions all took place in the same day, in the same room, one after the other, and together provided three different perspectives on lambdas, parallel collections, and parallelism in general in Java 8. On the road to JDK 8: Lambda, parallel libraries, and more by Joe Darcy Closures and Collections - the World After Eight by Maurice Naftalin Fork / Join, lambda & parallel() : parallel computing made (too ?) easy by Jose Paumard In this post, I will cover the first session, with the other two coming soon. On the road to JDK 8: Lambda, parallel libraries, and more In the first session, Joe Darcy, a lead engineer of several projects at Oracle, introduced the key changes to the language coming in JDK 8, such as lambda expressions and default methods, summarized the implementation approach, and examined the parallel libraries and their new programming model. The slides from this session are available here. Evolving the Java platform Joe started by talking a bit about the context and concerns related to evolving the language. The general evolution policy for OpenJDK is: Don't break binary compatibility Avoid introducing source incompatibilities. Manage behavioral compatibility changes The above list also extends to the language evolution. These rules mean that old classfiles will be always recognized, the cases when currently legal code stops compiling are limited, and changes in the generated code that introduce behavioral changes are also avoided. The goals of this policy are to keep existing binaries linking and running, and to keep existing sources compiling. This has also influenced the sets of features chosen to be implemented in the language itself, as well as how they were implemented. Such concerns were also in effect when adding closures to Java. Interfaces, for example, are a double-edged sword. With the language features that we have today, they cannot evolve compatibly over time. However, in reality APIs age, as people's expectations how to use them evolve. Adding closures to the language results in a really different programming model, which implies it would be really helpful if interfaces could be evolved compatibly. This resulted in a change affecting both the language and the VM, known as default methods. Project Lambda Project Lambda introduces a coordinated language, library, and VM change. In the language, there are lambda expressions and default methods. In the libraries, there are bulk operations on collections and additional support for parallelism. In the VM, besides the default methods, there are also enhancements to the invokedynamic functionality. This is the biggest change to the language ever done, bigger than other significant changes such as generics. What is a lambda expression? A lambda expression is an anonymous method having an argument list, a return type, and a body, and able to refer to values from the enclosing scope: (Object o) -> o.toString() (Person p) -> p.getName().equals(name) Besides lambda expressions, there is also the method reference syntax: Object::toString() The main benefit of lambdas is that it allows the programmer to treat code as data, store it in variables and pass it to methods. Some history When Java was first introduced in 1995 not many languages had closures, but they are present in pretty much every major language today, even C++. For Java, it has been a long and winding road to get support for closures, until Project Lambda finally started in Dec 2009. The current status is that JSR 335 is in early draft review, there are binary builds available, and it's expected to become very soon part of the mainline JDK 8 builds. Internal and external iteration There are two ways to do iteration - internal and external. In external iteration you bring the data to the code, whereas in internal iteration you bring the code to the data. External iteration is what we have today, for example: for (Shape s : shapes) { if (s.getColor() == RED) s.setColor(BLUE); } There are several limitations with this approach. One of them is that the above loop is inherently sequential, even though there is no fundamental reason it couldn't be executed by multiple threads. Re-written to use internal iteration with lambda, the above code would be: shapes.forEach(s -> { if (s.getColor() == RED) s.setColor(BLUE); }) This is not just a syntactic change, since now the library is in control of how the iteration happens. Written in this way, the code expresses much more what and less how, the how being left to the library. The library authors are free to use parallelism, out-of-order execution, laziness, and all kinds of other techniques. This allows the library to abstract over behavior, which is a fundamentally more powerful way of doing things. Functional Interfaces Project Lambda avoided adding new types, instead reusing existing coding practices. Java programmers are familiar with and have long used interfaces with one method, such as Runnable, Comparator, or ActionListener. Such interfaces are now called functional interfaces. There will be also new functional interfaces, such as Predicate and Block. A lambda expression evaluates to an instance of a functional interface, for example: Predicate isEmpty = s -> s.isEmpty(); Predicate isEmpty = String::isEmpty; Runnable r = () -> { System.out.println(“Boo!”) }; So existing libraries are forward-compatible with lambdas, which results in an "automatic upgrade", maintaining the significant investment in those libraries. Default Methods The above example used a new method on Collection, forEach. However, adding a method to an existing interface is a no-go in Java, as it would result in a runtime exception when a client calls the new method on an old class in which it is not implemented. A default method is an interface method that has an implementation, which is woven-in by the VM at link time. In a sense, this is multiple inheritance, but there's no reason to panic, since this is multiple inheritance of behavior, not state. The syntax looks like this: interface Collection { ... default void forEach(Block action) { for (T t : this) action.apply(t); } } There are certain inheritance rules to resolve conflicts between multiple supertypes: Rule 1 – prefer superclass methods to interface methods ("Class wins") Rule 2 – prefer more specific interfaces to less ("Subtype wins") Rule 3 – otherwise, act as if the method is abstract. In the case of conflicting defaults, the concrete class must provide an implementation. In summary, conflicts are resolved by looking for a unique, most specific default-providing interface. With these rules, "diamonds" are not a problem. In the worst case, when there isn't a unique most specific implementation of the method, the subclass must provide one, or there will be a compiler error. If this implementation needs to call to one of the inherited implementations, the new syntax for this is A.super.m(). The primary goal of default methods is API evolution, but they are useful as an inheritance mechanism on their own as well. One other way to benefit from them is optional methods. For example, most implementations of Iterator don't provide a useful remove(), so it can be declared "optional" as follows: interface Iterator { ... default void remove() { throw new UnsupportedOperationException(); } } Bulk operations on collections Bulk operations on collections also enable a map / reduce style of programming. For example, the above code could be further decomposed by getting a stream from the shapes collection, filtering the red elements, and then iterating only over the filtered elements: shapes.stream().filter(s -> s.getColor() == RED).forEach(s -> { s.setColor(BLUE); }); The above code corresponds even more closely to the problem statement of what you actually want to get done. There also other useful bulk operations such as map, into, or sum. The main advantages of this programming model are: More composability Clarity - each stage does one thing The library can use parallelism, out-of-order, laziness for performance, etc. The stream is the basic new abstraction being added to the platform. It encapsulates laziness as a better alternative to "lazy" collections such as LazyList. It is a facility that allows getting a sequence of elements out of it, its source being a collection, array, or a function. The basic programming model with streams is that of a pipeline, such as collection-filter-map-sum or array-map-sorted-forEach. Since streams are lazy, they only compute as elements are needed, which pays off big in cases like filter-map-findFirst. Another advantage of streams is that they allow to take advantage of fork/join parallelism, by having libraries use fork/join behind the scenes to ease programming and avoid boilerplate. Implementation technique In the last part of his talk, Joe described the advantages and disadvantages of the possible implementation techniques for lambda expressions. Different options such as inner classes and method handles were considered, but not accepted due to their shortcomings. The best solution would involve adding a level of indirection, by letting the compiler emit a declarative recipe, rather than imperative code, for creating a lambda, and then letting the runtime execute that recipe however it deems fit (and make sure it's fast). This sounded like a job for invokedynamic, a new invocation mode introduced with Java SE 7 for an entirely different reason - support for dynamic languages on the JVM. It turned out this feature is not just for dynamic languages any more, as it provides a suitable implementation mechanism for lambdas, and is also much better in terms of performance. Conclusion Project Lambda is a large, coordinated update across the Java language and platform. It enables much more powerful programming model for collections and takes advantage of new features in the VM. You can evaluate these new features by downloading the JDK8 build with lambda support. IDE support is also already available in NetBeans builds with Lambda support and IntelliJ IDEA 12 EAP builds with Lambda support. I already made my own experiences with lambdas in Java in Wordcounter. As I already wrote, I am convinced that this style of programming will quickly become pervasive in Java, so if you don't yet have experience with it, I do encourage you to try it out. Published on DZone by Stoyan Rachev (source).
December 18, 2012
by Stoyan Rachev
· 35,277 Views
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