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The Latest Data Engineering Topics

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Configuring Quartz With JDBCJobStore in Spring
I am starting a little series about Quartz scheduler internals, tips and tricks, this is chapter 0 - how to configure persistent job store.
April 7, 2012
by Tomasz Nurkiewicz
· 37,827 Views
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Algorithm of the Week: Rabin-Karp String Searching
Brute force string matching is a very basic sub-string matching algorithm, but it’s good for some reasons. For example it doesn’t require preprocessing of the text or the pattern. The problem is that it’s very slow. That is why in many cases brute force matching can’t be very useful. For pattern matching we need something faster, but to understand other sub-string matching algorithms let’s take a look once again at brute force matching. In brute force sub-string matching we checked every single character from the text with the first character of the pattern. Once we have a match between them we shift the comparison between the second character of the pattern with the next character of the text, as shown on the picture below. This algorithm is slow for mainly two reasons. First, we have to check every single character from the text. On the other hand even if we find a match between a text character and the first character of the pattern we continue to check step by step (character by character) every single symbol of the pattern in order to find whether it is in the text. So is there any other approach to find whether the text contains the pattern? In fact there is a “faster” approach. In this case, in order to avoid the comparison between the pattern and the text character by character, we’ll try to compare them all at once, so we need a good hash function. With its help we can hash the pattern and check against hashed sub-strings of the text. We must be sure that the hash function is returning “small” hash codes for larger sub-strings. Another problem is that for larger patterns we can’t expect to have short hashes. But besides this the approach should be quite effective compared to the brute force string matching. This approach is known as Rabin-Karp algorithm. Overview Michael O. Rabin and Richard M. Karp came up with the idea of hashing the pattern and to check it against a hashed sub-string from the text in 1987. In general the idea seems quite simple, the only thing is that we need a hash function that gives different hashes for different sub-strings. Said hash function, for instance, may use the ASCII codes for every character, but we must be careful for multi-lingual support. The hash function may vary depending on many things, so it may consist of ASCII char to number converting, but it can also be anything else. The only thing we need is to convert a string (pattern) into some hash that is faster to compare. Let’s say we have the string “hello world”, and let’s assume that its hash is hash(‘hello world’) = 12345. So if hash(‘he’) = 1 we can say that the pattern “he” is contained in the text “hello world”. So in every step, we take from the text a sub-string with the length of m, where m is the pattern length. Thus we hash this sub-string and we can directly compare it to the hashed pattern, as in the picture above. Implementation So far we saw some diagrams explaining the Rabin-Karp algorithm, but let’s take a look at its implementation here, in this very basic example where a simple hash table is used in order to convert the characters into integers. The code is PHP and it’s used only to illustrate the principles of this algorithm. function hash_string($str, $len) { $hash = ''; $hash_table = array( 'h' => 1, 'e' => 2, 'l' => 3, 'o' => 4, 'w' => 5, 'r' => 6, 'd' => 7, ); for ($i = 0; $i < $len; $i++) { $hash .= $hash_table[$str{$i}]; } return (int)$hash; } function rabin_karp($text, $pattern) { $n = strlen($text); $m = strlen($pattern); $text_hash = hash_string(substr($text, 0, $m), $m); $pattern_hash = hash_string($pattern, $m); for ($i = 0; $i < $n-$m+1; $i++) { if ($text_hash == $pattern_hash) { return $i; } $text_hash = hash_string(substr($text, $i, $m), $m); } return -1; } // 2 echo rabin_karp('hello world', 'ello'); Multiple Pattern Match It’s great to say that the Rabin-Karp algorithm is great for multiple pattern match. Indeed its nature is supposed to support such functionality, which is its advantage in comparison to other string searching algorithms. Complexity The Rabin-Karp algorithm has the complexity of O(nm) where n, of course, is the length of the text, while m is the length of the pattern. So where is it compared to brute-force matching? Well, brute force matching complexity is O(nm), so as it seems there’s not much of a gain in performance. However, it’s considered that Rabin-Karp’s complexity is O(n+m) in practice, and that makes it a bit faster, as shown on the chart below. Note that the Rabin-Karp algorithm also needs O(m) preprocessing time. Application As we saw Rabin-Karp is not much faster than brute force matching. So where we should use it? 3 Reasons Why Rabin-Karp is Cool 1. Good for plagiarism, because it can deal with multiple pattern matching! 2. Not faster than brute force matching in theory, but in practice its complexity is O(n+m)! 3. With a good hashing function it can be quite effective and it’s easy to implement! 2 Reasons Why Rabin-Karp is Not Cool 1. There are lots of string matching algorithms that are faster than O(n+m) 2. It’s practically as slow as brute force matching and it requires additional space Final Words Rabin-Karp is a great algorithm for one simple reason – it can be used to match against multiple patterns. This makes it perfect to detect plagiarism even for larger phrases.
April 3, 2012
by Stoimen Popov
· 36,774 Views
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Wrapping Begin/End Async API Into C#5 Tasks
Microsoft offered programmers several different ways of dealing with the asynchronous programming since .NET 1.0. The first model was Asynchronous programming model or APM for short. The pattern is implemented with two methods named BeginOperation and EndOperation. .NET 4 introduced new pattern – Task Asynchronous Pattern and with the introduction of .NET 4.5, Microsoft added language support for language integrated asynchronous coding style. You can check the MSDN for more samples and information. I will assume that you are familiar with it and have written code using it. You can wrap existing APM pattern into TPL pattern using the Task.Factory.FromAsync methods. For example: public static Task> ExecuteAsync(this DataServiceQuery query, object state) { return Task.Factory.FromAsync>(query.BeginExecute, query.EndExecute, state); } It is easy to wrap most of the asynchronous functions this way, but some cannot be since the wrapper functions assume that the last two parameters to the BeginOperation are AsyncCallback and object, and there are some versions of asynchronous operations that have different specifications. Examples: Extra parameters after the object state parameter: IAsyncResult DataServiceContext.BeginExecuteBatch( AsyncCallback callback, object state, params DataServiceRequest[] queries); Missing the expected object state parameter and different return type: ICancelableAsyncResult BeginQuery(AsyncCallback callBack); WorkItemCollection EndQuery(ICancelableAsyncResult car); Short solution for the first example The short and elegant way for wrapping the first example is to provide the following wrapper: public static Task ExecuteBatchAsync(this DataServiceContext context, object state, params DataServiceRequest[] queries) { if (context == null) throw new ArgumentNullException("context"); return Task.Factory.FromAsync( context.BeginExecuteBatch(null, state, queries), context.EndExecuteBatch); } We simply call the Begin method ourselves and then wrap it using an another overload for FromAsync function. The longer way However, we can fully wrap it ourselves by simulating what the FromAsync wrapper does. The complete code is listed below. public static Task ExecuteBatchAsync(this DataServiceContext context, object state, params DataServiceRequest[] queries) { // this will be our sentry that will know when our async operation is completed var tcs = new TaskCompletionSource(); try { context.BeginExecuteBatch((iar) => { try { var result = context.EndExecuteBatch(iar as ICancelableAsyncResult); tcs.TrySetResult(result); } catch (OperationCanceledException ex) { // if the inner operation was canceled, this task is cancelled too tcs.TrySetCanceled(); } catch (Exception ex) { // general exception has been set bool flag = tcs.TrySetException(ex); if (flag && ex as ThreadAbortException != null) { tcs.Task.m_contingentProperties.m_exceptionsHolder.MarkAsHandled(false); } } }, state, queries); } catch { tcs.TrySetResult(default(DataServiceResponse)); // propagate exceptions to the outside throw; } return tcs.Task; } Besides educational benefits, writing the full wrapper code allows us to add cancellation, logging and diagnostic information. Once we understand how to wrap APM pattern, We can now tackle the second problem easily. Handling the BeginQuery/EndQuery We will first create our own wrapper function in the spirit of the above code with the notable difference that we use the ICancelableAsyncResult interface instead of the IAsyncResult. public static class TaskEx { public static Task FromAsync(Func beginMethod, Func endMethod) { if (beginMethod == null) throw new ArgumentNullException("beginMethod"); if (endMethod == null) throw new ArgumentNullException("endMethod"); var tcs = new TaskCompletionSource(); try { beginMethod((iar) => { try { var result = endMethod(iar as ICancelableAsyncResult); tcs.TrySetResult(result); } catch (OperationCanceledException ex) { tcs.TrySetCanceled(); } catch (Exception ex) { bool flag = tcs.TrySetException(ex); if (flag && ex as ThreadAbortException != null) { tcs.Task.m_contingentProperties.m_exceptionsHolder.MarkAsHandled(false); } } }); } catch { tcs.TrySetResult(default(TResult)); throw; } return tcs.Task; } } The code is pretty self-explanatory and we can go ahead with the wrapping. There are four different operations that are exposed both in synchronous and asynchronous version: Query, LinkQuery, CountOnlyQuery and RegularQuery. The extension methods are short since we have already created our generic wrapper above: public static Task RunQueryAsync(this Query query) { return TaskEx.FromAsync(query.BeginQuery, query.EndQuery); } public static Task RunLinkQueryAsync(this Query query) { return TaskEx.FromAsync(query.BeginLinkQuery, query.EndLinkQuery); } public static Task RunCountOnlyQueryAsync(this Query query) { return TaskEx.FromAsync(query.BeginCountOnlyQuery, query.EndCountOnlyQuery); } public static Task RunRegularQueryAsync(this Query query) { return TaskEx.FromAsync(query.BeginRegularQuery, query.EndRegularQuery); } That is it for today, you can write your own handy extensions easily for APM functions out there.
April 2, 2012
by Toni Petrina
· 11,332 Views
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Converting a Value to String in JavaScript
In JavaScript, there are three main ways in which any value can be converted to a string. This blog post explains each way, along with its advantages and disadvantages. Three approaches for converting to string The three approaches for converting to string are: value.toString() "" + value String(value) The problem with approach #1 is that it doesn’t work if the value is null or undefined. That leaves us with approaches #2 and #3, which are basically equivalent. ""+value: The plus operator is fine for converting a value when it is surrounded by non-empty strings. As a way for converting a value to string, I find it less descriptive of one’s intentions. But that is a matter of taste, some people prefer this approach to String(value). String(value): This approach is nicely explicit: Apply the function String() to value. The only problem is that this function call will confuse some people, especially those coming from Java, because String is also a constructor. However, function and constructor produce completely different results: > String("abc") === new String("abc") false > typeof String("abc") 'string' > String("abc") instanceof String false > typeof new String("abc") 'object' > new String("abc") instanceof String true The function produces, as promised, a string (a primitive [1]). The constructor produces an instance of the type String (an object). The latter is hardly ever useful in JavaScript, which is why you can usually forget about String as a constructor and concentrate on its role as converting to string. A minor difference between ""+value and String(value) Until now you have heard that + and String() convert their “argument” to string. But how do they actually do that? It turns out that they do it in slightly different ways, but usually arrive at the same result. Converting primitives to string Both approaches use the internal ToString() operation to convert primitives to string. “Internal” means: a function specified by the ECMAScript 5.1 (§9.8) that isn’t accessible to the language itself. The following table explains how ToString() operates on primitives. Argument Result undefined "undefined" null "null" boolean value either "true" or "false" number value the number as a string, e.g. "1.765" string value no conversion necessary Converting objects to string Both approaches first convert an object to a primitive, before converting that primitive to string. However, + uses the internal ToNumber() operator (except for dates [2]), while String() uses ToString(). ToNumber(): To convert an object obj to a primitive, invoke obj.valueOf(). If the result is primitive, return that result. Otherwise, invoke obj.toString(). If the result is primitive, return that result. Otherwise, throw a TypeError. ToString(): Works the same, but invokes obj.toString() before obj.valueOf(). With the following object, you can observe the difference: var obj = { valueOf: function () { console.log("valueOf"); return {}; // not a primitive, keep going }, toString: function () { console.log("toString"); return {}; // not a primitive, keep going } }; Interaction: > "" + obj valueOf toString TypeError: Cannot convert object to primitive value > String(obj) toString valueOf TypeError: Cannot convert object to primitive value Most objects use the default implementation of valueOf() which returns this for objects. Hence, that method will always be skipped by ToNumber(). > var x = {} > x.valueOf() === x true Instances of Boolean, Number, and String wrap primitives and valueOf returns the wrapped primitive. But that still means that the final result will be the same as for toString(), even though it will have been produced in a different manner. > var n = new Number(756) > n.valueOf() === n false > n.valueOf() === 756 true Conclusion Which of the three approaches for converting to string should you choose? value.toString() can be OK, if you are sure that value will never be null or undefined. Otherwise, ""+value and String(value) are mostly equivalent. Which one people prefer is a matter of taste. I find String(value) more explicit. Related posts JavaScript values: not everything is an object [primitives versus objects] What is {} + {} in JavaScript? [explains how the + operator works] String concatenation in JavaScript [how to best concatenate many strings]
March 30, 2012
by Axel Rauschmayer
· 31,953 Views · 2 Likes
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Using "Natural": A NLP Module for node.js
Like most node modules "natural" is packaged as an NPM and can be installed from the command line with node.js.
March 27, 2012
by Christopher Umbel
· 64,288 Views · 3 Likes
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Algorithm of the Week: Brute Force String Matching
String matching is something crucial for database development and text processing software. Fortunately, every modern programming language and library is full of functions for string processing that help us in our everyday work. However it's important to understand their principles. String algorithms can typically be divided into several categories. One of these categories is string matching. When it comes to string matching, the most basic approach is what is known as brute force, which simply means to check every single character from the text to match against the pattern. In general we have a text and a pattern (most commonly shorter than the text). What we need to do is to answer the question whether this pattern appears in the text. Overview The principles of brute force string matching are quite simple. We must check for a match between the first characters of the pattern with the first character of the text as on the picture bellow. If they don’t match, we move forward to the second character of the text. Now we compare the first character of the pattern with the second character of the text. If they don’t match again, we move forward until we get a match or until we reach the end of the text. In case they match, we move forward to the second character of the pattern comparing it with the “next” character of the text, as shown in the picture bellow. Just because we have found a match between the first character from the pattern and some character of the text, doesn’t mean that the pattern appears in the text. We must move forward to see whether the full pattern is contained in the text. Implementation Implementation of brute force string matching is easy and here we can see a short PHP example. The bad news is that this algorithm is naturally quite slow. function sub_string($pattern, $subject) { $n = strlen($subject); $m = strlen($pattern); for ($i = 0; i < $n-$m; $i++) { $j = 0; while ($j < $m && $subject[$i+$j] == $pattern[$j]) { $j++; } if ($j == $m) return $i; } return -1; } echo sub_string('o wo', 'hello world!'); Complexity As I said this algorithm is slow. Actually every algorithm that contains “brute force” in its name is slow, but to show how slow string matching is, I can say that its complexity is O(n.m). Here n is the length of the text, while m is the length of the pattern. In case we fix the length of the text and test against variable length of the pattern, again we get a rapidly growing function. Application Brute force string matching can be very ineffective, but it can also be very handy in some cases. Just like the sequential search. It can be very useful… Doesn’t require pre-processing of the text – Indeed if we search the text only once we don’t need to pre-process it. Most of the algorithms for string matching need to build an index of the text in order to search quickly. This is great when you’ve to search more than once into a text, but if you do only once, perhaps (for short texts) brute force matching is great! Doesn’t require additional space – Because brute force matching doesn’t need pre-processing it also doesn’t require more space, which is one cool feature of this algorithm Can be quite effective for short texts and patterns It can be ineffective… If we search the text more than once – As I said in the previous section if you perform the search more than once it’s perhaps better to use another string matching algorithm that builds an index, and it’s faster. It’s slow – In general brute force algorithms are slow and brute force matching isn’t an exception. Final Words String matching is something very special in software development and it is used in various cases, so every developer must be familiar with this topic.
March 27, 2012
by Stoimen Popov
· 61,945 Views · 3 Likes
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Cassandra Indexing: The Good, the Bad and the Ugly
Within NoSQL, the operations of indexing, fetching and searching for information are intimately tied to the physical storage mechanisms. It is important to remember that rows are stored across hosts, but a single row is stored on a single host. (with replicas) Columns families are stored in sorted order, which makes querying a set of columns efficient (provided you are spanning rows). The Bad : Partitioning One of the tough things to get used to at first is that without any indexes queries that span rows can (very) be bad. Thinking back to our storage model however, that isn't surprising. The strategy that Cassandra uses to distribute the rows across hosts is called Partitioning. Partitioning is the act of carving up the range of rowkeys assigning them into the "token ring", which also assigns responsibility for a segment (i.e. partition) of the rowkey range to each host. You've probably seen this when you initialized your cluster with a "token". The token gives the host a location along the token ring, which assigns responsibility for a section of the token range. Partitioning is the act of mapping the rowkey into the token range. There are two primary partitioners: Random and Order Preserving. They are appropriately named. The RandomPartitioner hashes the rowkeys into tokens. With the RandomPartitioner, the token is a hash of the rowkey. This does a good job of evenly distributing your data across a set of nodes, but makes querying a range of the rowkey space incredibly difficult. From only a "start rowkey" value and an "end rowkey" value, Cassandra can't determine what range of the token space you need. It essentially needs to perform a "table scan" to answer the query, and a "table scan" in Cassandra is bad because it needs to go to each machine (most likely ALL machines if you have a good hash function) to answer the query. Now, at the great cost of even data distribution, you can employ the OrderPreservingPartitioner (OPP). I am *not* down with OPP. The OPP preserves order as it translates rowkeys into tokens. Now, given a start rowkey value and a end rowkey value, Cassandra *can* determine exactly which hosts have the data you are looking for. It computes the start value to a token the end value to a token, and simply selects and returns everything in between. BUT, by preserving order, unless your rowkeys are evenly distributed across the space, your tokens won't be either and you'll get a lopsided cluster, which greatly increases the cost of configuration and administration of the cluster. (not worth it) The Good : Secondary Indexes Cassandra does provide a native indexing mechanism in Secondary Indexes. Secondary Indexes work off of the columns values. You declare a secondary index on a Column Family. Datastax has good documentation on the usage. Under the hood, Cassandra maintains a "hidden column family" as the index. (See Ed Anuff's presentation for specifics) Since Cassandra doesn't maintain column value information in any one node, and secondary indexes are on columns value (rather than rowkeys), a query still needs to be sent to all nodes. Additionally, secondary indexes are not recommended for high-cardinality sets. I haven't looked yet, but I'm assuming this is because of the data model used within the "hidden column family". If the hidden column family stores a row per unique value (with rowkeys as columns), then it would mean scanning the rows to determine if they are within the range in the query. From Ed's presentation: Not recommended for high cardinality values(i.e.timestamps,birthdates,keywords,etc.) Requires at least one equality comparison in a query--not great for less-than/greater-than/range queries Unsorted - results are in token order, not query value order Limited to search on datatypes, Cassandra natively understands With all that said, secondary indexes work out of the box and we've had good success using them on simple values. The Ugly : Do-It-Yourself (DIY) / Wide-Rows Now, beauty is in the eye of the beholder. One of the beautiful things about NoSQL is the simplicity. The constructs are simple: Keyspaces, Column Families, Rows and Columns. Keeping it simple however means sometimes you need to take things into your own hands. This is the case with wide-row indexes. Utilizing Cassandra's storage model, its easy to build your own indexes where each row-key becomes a column in the index. This is sometimes hard to get your head around, but lets imagine we have a case whereby we want to select all users in a zip code. The main users column family is keyed on userid, zip code is a column on each user row. We could use secondary indexes, but there are quite a few zip codes. Instead we could maintain a column family with a single row called "idx_zipcode". We could then write columns into this row of the form "zipcode_userid". Since the columns are stored in sorted order, it is fast to query for all columns that start with "18964" (e.g. we could use 18964_ and 18964_ZZZZZZ as start and end values). One obvious downside of this approach is that rows are self-contained on a host. (again except for replicas) This means that all queries are going to hit a single node. I haven't yet found a good answer for this. Additionally, and IMHO, the ugliest part of DIY wide-row indexing is from a client perspective. In our implementation, we've done our best to be language agnostic on the client-side, allowing people to pick the best tool for the job to interact with the data in Cassandra. With that mentality, the DIY indexes present some trouble. Wide-rows often use composite keys (imagine if you had an idx_state_zip, which would allow you to query by state then zip). Although there is "native" support for composite keys, all of the client libraries implement their own version of them (Hector, Astyanax, and Thrift). This means that client needing to query data needs to have the added logic to first query the index, and additionally all clients need to construct the composite key in the same manner. Making It Better... For this very reason, we've decided to release two open source projects that help push this logic to the server-side. The first project is Cassandra-Triggers. This allows you to attached asynchronous activities to writes in Cassandra. (one such activity could be indexing) We've also released Cassandra-Indexing. This is hot off the presses and is still in its infancy (e.g. it only supports UT8Types in the index), but the intent is to provide a generic server-side mechanism that indexes data as its written to Cassandra. Employing the same server-side technique we used in Cassandra-Indexing, you simply configure the columns you want indexed, and the AOP code does the rest as you write to the target CF. As always, questions, comments and thoughts are welcome. (especially if I'm off-base somewhere)
March 23, 2012
by Brian O' Neill
· 35,658 Views
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PHP objects in MongoDB with Doctrine
An is equivalent to an Object-Relational Mapper, but with its targets are documents of a NoSQL database instead of table rows. No one said that a Data Mapper must always rely on a relational database as its back end. In the PHP world, probably the Doctrine ODM for MongoDB is the most successful. This followes to the opularity of Mongo, which is a transitional product between SQL and NoSQL, still based on some relational concepts like queries. Lots of features The Doctrine Mongo ODM supports mapping of objects via annotations placed in the class source code, or via external XML or YAML files. In this and in many aspects it is based on the same concepts as the Doctrine ORM: it features a Facade DocumentManager object and a Unit Of Work that batches changes to the database when objects are added to it. Moreover, two different types of relationships between objects are supported: references and embedded documents. The first is the equivalent of the classical pointer to another row which ORM always transform object references into; the second actually stores an object inside another one, like you would do with a Value Object. Thus, at least in Doctrine's case, it is easier to map objects as documents that as rows. As said before, the ODM borrows some concepts and classes from the ORM, in particular from the Doctrine\Common package which features a standard collection class. So if you have built objects mapped with the Doctrine ORM nothing changes for persisting them in MongoDB, except for the mapping metadata itself. Advantages If an ORM is sometimes a leaky abstraction, an ODM probably becomes an issue less often. It has less overhead than an ORM, since there is no schema to define and the ability to embed objects means there should be no compromises between the object model and the capabilities of the database. How many times we have renounced introducing a potential Value Object because of the difficulty in persisting it? The case for an ODM over a plain Mongo connection object is easy to make: you will still be able to use objects with proper encapsulation (like private fields and associations) and behavior (many methods) instead of extracting just a JSON package from your database. Installation A prerequisite for the ODM is the presence of the mongo extension, that can be installed via pecl. After having verified the extension is present, grab the Doctrine\Common as the 2.2.x package, and a zip of the doctrine-mongodb and doctrine-mongodb-odm projects from Github. Decompress everything into a Doctrine/ folder. After having setup autoloading for classes in Doctrine\, use this bootstrap to get a DocumentManager (the equivalent of EntityManager): use Doctrine\Common\Annotations\AnnotationReader, Doctrine\ODM\MongoDB\DocumentManager, Doctrine\MongoDB\Connection, Doctrine\ODM\MongoDB\Configuration, Doctrine\ODM\MongoDB\Mapping\Driver\AnnotationDriver; private function getADm() { $config = new Configuration(); $config->setProxyDir(__DIR__ . '/mongocache'); $config->setProxyNamespace('MongoProxies'); $config->setDefaultDB('test'); $config->setHydratorDir(__DIR__ . '/mongocache'); $config->setHydratorNamespace('MongoHydrators'); $reader = new AnnotationReader(); $config->setMetadataDriverImpl(new AnnotationDriver($reader, __DIR__ . '/Documents')); return DocumentManager::create(new Connection(), $config); } You will be able to call persist() and flush() on the DocumentManager, along with a set of other methods for querying like find() and getRepository(). Integration with an ORM We are researching a solution for versioning objects mapped with the Doctrine ORM. Doing this with a version column would be invasive, and also strange where multiple objects are involved (do you version just the root of an object graph? Duplicate the other ones when they change? How can you detect that?) The idea is taking a snapshot and putting it in a read only MongoDB instance, where all previous versions can be retrieved later for auditing (business reasons). This has been verified to be technically possible: the DocumentManager and EntityManager are totally separate object graphs, so they won't clash with each other. The only point of conflict is the annotations of model classes, since both use different version of @Id, and can see the other's annotation like @Entity and @Document while parsing. This can be solved by using aliases for all the annotations, using their parent namespace basename as a prefix: model = $model; } public function __toString() { return "Car #$this->document_id: $this->id, $this->model"; } } This make us able to save a copy of an ORM object into Mongo: $car = new Car('Ford'); $this->em->persist($car); $this->em->flush(); $this->dm->persist($car); $this->dm->flush(); var_dump($car->__toString()); $this->assertTrue(strlen($car->__toString()) > 20); The output produces by this test is: .string(38) "Car #4f61a8322f762f1121000000: 3, Ford" When retrieving the object, one of the two ids will be null as it is ignored by the ORM or ODM. I am not using the same field because I want to store multiple copies of a row, so it's id alone won't be unique. If you're interested, checkout my hack on Github. It contains the running example presented in this post. Remember to create the relational schema with: $ php doctrine.php orm:schema-tool:create before running the test with phpunit --bootstrap bootstrap.php DoubleMappingTest.php MongoDB won't need the schema setup, of course. There are still some use cases to test, like the behavior in the presence of proxies, but it seems that non-invasive approach of Data Mappers like Doctrine 2 is paying off: try mapping an object in multiple database with Active Records.
March 20, 2012
by Giorgio Sironi
· 22,513 Views
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Adding a .first() method to Django's QuerySet
In my last Django project, we had a set of helper functions that we used a lot. The most used was helpers.first, which takes a query set and returns the first element, or None if the query set was empty. Instead of writing this: try: object = MyModel.objects.get(key=value) except model.DoesNotExist: object = None You can write this: def first(query): try: return query.all()[0] except: return None object = helpers.first(MyModel.objects.filter(key=value)) Note, that this is not identical. The get method will ensure that there is exactly one row in the database that matches the query. The helper.first() method will silently eat all but the first matching row. As long as you're aware of that, you might choose to use the second form in some cases, primarily for style reasons. But the syntax on the helper is a little verbose, plus you're constantly including helpers.py. Here is a version that makes this available as a method on the end of your query set chain. All you have to do is have your models inherit from this AbstractModel. class FirstQuerySet(models.query.QuerySet): def first(self): try: return self[0] except: return None class ManagerWithFirstQuery(models.Manager): def get_query_set(self): return FirstQuerySet(self.model) class AbstractModel(models.Model): objects = ManagerWithFirstQuery() class Meta: abstract = True class MyModel(AbstractModel): ... Now, you can do the following. object = MyModel.objects.filter(key=value).first()
March 19, 2012
by Chase Seibert
· 12,667 Views
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GapList – a Lightning-Fast List Implementation
This article introduces GapList, an implementation which strives for combining the strengths of both ArrayList and LinkedList.
March 19, 2012
by Thomas Mauch
· 65,157 Views · 4 Likes
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Defensive Programming vs. Batshit Crazy Paranoid Programming
Hey, let’s be careful out there. --Sergeant Esterhaus, daily briefing to the force of Hill Street Blues When developers run into an unexpected bug and can’t fix it, they’ll “add some defensive code” to make the code safer and to make it easier to find the problem. Sometimes just doing this will make the problem go away. They’ll tighten up data validation – making sure to check input and output fields and return values. Review and improve error handling – maybe add some checking around “impossible” conditions. Add some helpful logging and diagnostics. In other words, the kind of code that should have been there in the first place. Expect the Unexpected The whole point of defensive programming is guarding against errors you don’t expect. ---Steve McConnell, Code Complete The few basic rules of defensive programming are explained in a short chapter in Steve McConnell’s classic book on programming, Code Complete: Protect your code from invalid data coming from “outside”, wherever you decide “outside” is. Data from an external system or the user or a file, or any data from outside of the module/component. Establish “barricades” or “safe zones” or “trust boundaries” – everything outside of the boundary is dangerous, everything inside of the boundary is safe. In the barricade code, validate all input data: check all input parameters for the correct type, length, and range of values. Double check for limits and bounds. After you have checked for bad data, decide how to handle it. Defensive Programming is NOT about swallowing errors or hiding bugs. It’s about deciding on the trade-off between robustness (keep running if there is a problem you can deal with) and correctness (never return inaccurate results). Choose a strategy to deal with bad data: return an error and stop right away (fast fail), return a neutral value, substitute data values, … Make sure that the strategy is clear and consistent. Don’t assume that a function call or method call outside of your code will work as advertised. Make sure that you understand and test error handling around external APIs and libraries. Use assertions to document assumptions and to highlight “impossible” conditions, at least in development and testing. This is especially important in large systems that have been maintained by different people over time, or in high-reliability code. Add diagnostic code, logging and tracing intelligently to help explain what’s going on at run-time, especially if you run into a problem. Standardize error handling. Decide how to handle “normal errors” or “expected errors” and warnings, and do all of this consistently. Use exception handling only when you need to, and make sure that you understand the language’s exception handler inside out. Programs that use exceptions as part of their normal processing suffer from all the readability and maintainability problems of classic spaghetti code. --The Pragmatic Programmer I would add a couple of other rules. From Michael Nygard’s Release It! n Never ever wait forever on an external call, especially a remote call. Forever can be a long time when something goes wrong. Use time-out/retry logic and his Circuit Breaker stability pattern to deal with remote failures. And for languages like C and C++, defensive programming also includes using safe function calls to avoid buffer overflows and common coding mistakes. Different Kinds of Paranoia The Pragmatic Programmer describes defensive programming as “Pragmatic Paranoia”. Protect your code from other people’s mistakes, and your own mistakes. If in doubt, validate. Check for data consistency and integrity. You can’t test for every error, so use assertions and exception handlers for things that “can’t happen”. Learn from failures in test and production – if this failed, look for what else can fail. Focus on critical sections of code – the core, the code that runs the business. Healthy Paranoid Programming is the right kind of programming. But paranoia can be taken too far. In the Error Handling chapter of Clean Code, Michael Feathers cautions that “many code bases are dominated by error handling” --Michael Feathers, Clean Code Too much error handling code not only obscures the main path of the code (what the code is actually trying to do), but it also obscures the error handling logic itself – so that it is harder to get it right, harder to review and test, and harder to change without making mistakes. Instead of making the code more resilient and safer, it can actually make the code more error-prone and brittle. There’s healthy paranoia, then there’s over-the-top-error-checking, and then there’s bat shit crazy crippling paranoia – where defensive programming takes over and turns in on itself. The first real world system I worked on was a “Store and Forward” network control system for servers (they were called minicomputers back then) across the US and Canada. It shared data between distributed systems, scheduled jobs, and coordinated reporting across the network. It was designed to be resilient to network problems and automatically recover and restart from operational failures. This was ground breaking stuff at the time, and a hell of a technical challenge. The original programmer on this system didn’t trust the network, didn’t trust the O/S, didn’t trust Operations, didn’t trust other people’s code, and didn’t trust his own code – for good reason. He was a chemical engineer turned self-taught system programmer who drank a lot while coding late at night and wrote thousands of lines of unstructured FORTRAN and Assembler under the influence. The code was full of error checking and self diagnostics and error-correcting code, the files and data packets had their own checksums and file-level passwords and hidden control labels, and there was lots of code to handle sequence accounting exceptions and timing-related problems – code that mostly worked most of the time. If something went wrong that it couldn’t recover from, programs would crash and report a “label of exit” and dump the contents of variables – like today’s stack traces. You could theoretically use this information to walk back through the code to figure out what the hell happened. None of this looked anything like anything that I learned about in school. Reading and working with this code was like programming your way out of Arkham Asylum. If the programmer ran into bugs and couldn’t fix them, that wouldn’t stop him. He would find a way to work around the bugs and make the system keep running. Then later after he left the company, I would find and fix a bug and congratulate myself until it broke some “error-correcting” code somewhere else in the network that now depended on the bug being there. So after I finally figured out what was going on, I took out as much of this “protection” as I could safely remove, and cleaned up the error handling so that I could actually maintain the system without losing what was left of my mind. I setup trust boundaries for the code – although I didn’t know that’s what it was called then – deciding what data couldn’t be trusted and what could. Once this was done I was able to simplify the defensive code so that I could make changes without the system falling over itself, and still protect the core code from bad data, mistakes in the rest of the code, and operational problems. Making code safer is simple The point of defensive coding is to make the code safer and to help whoever is going to maintain and support the code – not make their job harder. Defensive code is code – all code has bugs, and, because defensive code is dealing with exceptions, it is especially hard to test and to be sure that it will work when it has to. Understanding what conditions to check for and how much defensive coding is needed takes experience, working with code in production and seeing what can go wrong in the real world. A lot of the work involved in designing and building secure, resilient systems is technically difficult or expensive. Defensive programming is neither – like defensive driving, it’s something that everyone can understand and do. It requires discipline and awareness and attention to detail, but it’s something that we all need to do if we want to make the world safe.
March 19, 2012
by Jim Bird
· 24,497 Views
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Hadoop Basics—Creating a MapReduce Program
The Map Reduce Framework works in two main phases to process the data, which are the "map" phase and the "reduce" phase.
March 18, 2012
by Carlo Scarioni
· 212,903 Views · 4 Likes
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Deploying an Artifact to the Local Cache in Gradle
One question that came up a couple times this week is how to set gradle up to deploy jars locally. For the most part I was satisfied with just having people push snapshot releases to our Artifactory server but some people did express a real desire to be able to publish a jar to the local resolution cache to test changes out locally. I’m still a fan of deploying snapshots from feature branches but luckily you can do a local publish and resolve with gradle. First off, ask yourself if the dependency is coupled enough to warrant being a submodule. Also, could just linking the project in your IDE be enough to get what you want done? If the answer to both questions are no then your next recourse is to use gradle’s excellent maven compatibility (don’t run!). For the project you want to publish locally you simply need to apply the maven plugin and make sure you have version and group set for the project (usually I put group and version in gradle.properties). apply plugin: 'java' apply plugin: 'maven' version = '0.5.1-SNAPSHOT' group = 'org.jamescarr.examples' That’s all you need to install it locally, just run gradle install from the project root to install it to the local m2 cache. Now let’s update your project that will depend on it. ... repositories { mavenCentral() mavenLocal() } dependencies { compile('org.jamecarr.examples:example-api:0.5.1-SNAPSHOT'){ changing=true } } The magic sauce here is using mavenLocal() as one of your resolution repositories. This will resolve against the local m2 cache. mavenCentral() can be replaced by whatever repositories you might use, it is only included since it’s the most often used. That’s it! I know some people dislike this approach due to ingrained disdain for maven but the beauty of it is that maven is silently at work and you really don’t get bothered by it.
March 16, 2012
by James Carr
· 33,931 Views
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Display an OLE Object from a Microsoft Access Database using OLE Stripper
In database programming, it happens a lot that you need to bind a picture box to a field with type of photo or image. For example, if you want to show an Employee’s picture from Northwind.mdb database, you might want to try the following code: picEmployees.DataBindings.Add(“Image”, bsEmployees, “Photo”, true); This code works if the images are stored in the database with no OLE header or the images stored as a raw image file formats. As the pictures stored in the Northwind database in are not stored in raw image file formats and they are stored as an OLE image documents, then you have to strip off the OLE header to work with the image properly. Binding imageBinding = new Binding("Image", bsEmployees, "ImageBlob.ImageBlob", true); imageBinding.Format += new ConvertEventHandler(this.PictureFormat); private void PictureFormat(object sender, ConvertEventArgs e) { Byte[] img = (Byte[])e.Value; MemoryStream ms = new MemoryStream(); int offset = 78; ms.Write(img, offset, img.Length - offset); Bitmap bmp = new Bitmap(ms); ms.Close(); // Writes the new value back e.Value = bmp; } Fortunately, there are some overload methods in .NET Framework to take care of this mechanism, but it cannot be guaranteed whether you need to strip off the OLE object by yourself or not. For example, you can use the following technique to access the images of the Northwind.mdb that ships with Microsoft Access and they will be rendered properly. picEmployees.DataBindings.Add(“Image”, bsEmployees, “Photo”, true, DataSourceUpdateMode.Never, new Bitmap(typeof(Button), “Button.bmp”)); Unfortunately, there are some scenarios that you need a better solution. For example, the Xtreme.mdb database that ships with Crystal Reports has a photo filed that cannot be handled by the preceding methods. For these complex scenarios, you can download the OLEStripper classes from here and re-write the PictureFormat method as it is shown below: private void PictureFormat(object sender, ConvertEventArgs e) { // photoIndex is same as Employee ID int photoIndex = Convert.ToInt32(e.Value); // Read the original OLE object ReadOLE olePhoto = new ReadOLE(); string PhotoPath = olePhoto.GetOLEPhoto(photoIndex); // Strip the original OLE object StripOLE stripPhoto = new StripOLE(); string StripPhotoPath = stripPhoto.GetStripOLE(PhotoPath); FileStream PhotoStream = new FileStream(StripPhotoPath , FileMode.Open); Image EmployeePhoto = Image.FromStream(PhotoStream); e.Value = EmployeePhoto; PhotoStream.Close(); }
March 15, 2012
by Amir Ahani
· 11,163 Views
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Circos: An Amazing Tool for Visualizing Big Data
storing massive amounts of data in a nosql data store is just one side of the big data equation. being able to visualize your data in such a way that you can easily gain deeper insights , is where things really start to get interesting. lately, i've been exploring various options for visualizing (directed) graphs, including circos . circos is an amazing software package that visualizes your data through a circular layout . although it's originally designed for displaying genomic data , it allows to create good-looking figures from data in any field. just transform your data set into a tabular format and you are ready to go. the figure below illustrates the core concept behind circos. the table's columns and rows are represented by segments around the circle. individual cells are shown as ribbons , which connect the corresponding row and column segments. the ribbons themselves are proportional in width to the value in the cell. when visualizing a directed graph , nodes are displayed as segments on the circle and the size of the ribbons is proportional to the value of some property of the relationships. the proportional size of the segments and ribbons with respect to the full data set allows you to easily identify the key data points within your table. in my case, i want to better understand the flow of visitors to and within the datablend site and blog; where do visitors come from (direct, referral, search, ...) and how do they navigate between pages. the rest of this article details how to 1) retrieve the raw visit information through the google analytics api, 2) persist this information as a graph in neo4j and 3) query and preprocess this data for visualization through circos. as always, the complete source code can be found on the datablend public github repository . 1. retrieving your google analytics data let's start by retrieving the raw google analytics data . the google analytics data api provides access to all dimensions and metrics that can be queried through the web application. in my case, i'm interested in retrieving the previous page path property for each page view. if a visitor enters through a page outside of the datablend website, the previous page path is marked as (entrance) . otherwise, it contains the internal path . we will use google's java data api to connect and retrieve this information. we are particularly interested in the pagepath , pagetitle , previouspagepath and medium dimensions, while our metric of choice is the number of pageviews . after setting the date range, the feed of entries that satisfy this criteria can be retrieved. for ease of use, we transform this data to a domain entity and filter/clean the data accordingly. if a visit originates from outside the datablend website, we store the specific medium (direct, referral, search, ...) as previous path. // authenticate analyticsservice = new analyticsservice(configuration.service); analyticsservice.setusercredentials(configuration.client_username, configuration.client_pass); // create query dataquery query = new dataquery(new url(configuration.data_url)); query.setids(configuration.table_id); query.setdimensions("ga:medium,ga:previouspagepath,ga:pagepath,ga:pagetitle"); query.setmetrics("ga:pageviews"); query.setstartdate(datestring); query.setenddate(datestring); // execute datafeed feed = analyticsservice.getfeed(createqueryurl(date), datafeed.class); // iterate and clean for (dataentry entry : feed.getentries()) { string pagepath = entry.stringvalueof("ga:pagepath"); string pagetitle = entry.stringvalueof("ga:pagetitle"); string previouspagepath = entry.stringvalueof("ga:previouspagepath"); string medium = entry.stringvalueof("ga:medium"); long views = entry.longvalueof("ga:pageviews"); // filter the data if (filter(pagepath) && filter(previouspagepath) && (!clean(previouspagepath).equals(clean(pagepath)))) { // check criteria are satisfied navigation navigation = new navigation(clean(previouspagepath), clean(pagepath), pagetitle, date, views); if (navigation.getsource().equals("(entrance)")) { // in case of an entrace, save its medium instead navigation.setsource(medium); } navigations.add(navigation); } } 2. storing navigational data as a directed graph in neo4j the set of site navigations can easily be stored as a directed graph in the neo4j graph database . nodes are site paths (or mediums), while relationships are the navigations themselves. we start by retrieving the navigations for a particular date range and retrieve (or lazily create) the nodes representing the source and target paths (or mediums). next we de-normalize the pageviews metric (for instance, 6 individual relationships will be created for 6 page-views). although this de-normalization step is not really required, i did so to make sure that the degree of my nodes is correct if i would perform other types of calculations. for each individual navigation relationship, we also store the date of visit . // retrieve navigations for a particular date list navigations = retrieval.getnavigations(date); // save them in the graph database transaction tx = graphdb.begintx(); // iterate and create for (navigation nav : navigations) { node source = getpath(nav.getsource()); node target = getpath(nav.gettarget()); if (!target.hasproperty("title")) { target.setproperty("title", nav.gettargettitle()); } for (long i = 0; i < nav.getamount(); i++) { // duplicate relationships relationship transition = source.createrelationshipto(target, relationships.navigation); transition.setproperty("date", date.gettime()); // save time as long } } // commit tx.success(); tx.finish(); 3. creating the circos tabular data format the circos tabular data format is quite easy to construct. it's basically a tab-delimited file with row and column headers. a cell is interpreted as a value that flows from the row entity to the column entity . we will use the neo4j cypher query language to retrieve the data of interest, namely all navigations that occurred within a certain time period . doing so allows us to create historical visualizations of our navigations and observe how visit flow behaviors are changing over time. // access the graph database graphdb = new embeddedgraphdatabase("var/analytics"); engine = new executionengine(graphdb); // execute the data range cypher query map params = new hashmap(); params.put("fromdate", from.gettime()); params.put("todate", to.gettime()); // execute the query executionresult result = engine.execute("start sourcepath=node:index(\"path:*\") " + "match sourcepath-[r]->targetpath " + "where r.date >= {fromdate} and r.date <= {todate} " + "return sourcepath,targetpath", params); next, we create the tab delimited file itself. we iterate through all entries (i.e. navigations) that match our cypher query and store them in a temporary list. afterwards, we start building the two-dimensional array by normalizing (i.e. summing) the number of navigations between the source and target paths. at the end, we filter this occurrence matrix on the minimal number of required navigations. this ensures that we will only create segments for paths that are relevant in the total population. as a final step, we print the occurrences matrix as a tab-delimited file. for each path, we will use a shorthand as the circos renderer seems to have problem with long string identifiers. // retrieve the results iterator> it = result.javaiterator(); list navigations = new arraylist(); map titles = new hashmap(); set paths = new hashset(); // iterate the results while (it.hasnext()) { map record = it.next(); string source = (string)((node) record.get("sourcepath")).getproperty("path"); string target = (string) ((node) record.get("targetpath")).getproperty("path"); string targettitle = (string) ((node) record.get("targetpath")).getproperty("title"); // reuse the navigation object as temorary holder navigations.add(new navigation(source, target, targettitle, new date(), 1)); paths.add(source); paths.add(target); if (!titles.containskey(target)) { titles.put(target, targettitle); } } // retrieve the various paths list pathids = arrays.aslist(paths.toarray(new string[]{})); // create the matrix that holds the info int[][] occurences = new int[pathids.size()][pathids.size()]; // iterate through all the navigations and update accordingly for (navigation navigation : navigations) { int sourceindex = pathids.indexof(navigation.getsource()); int targetindex = pathids.indexof(navigation.gettarget()); occurences[sourceindex][targetindex] = occurences[sourceindex][targetindex] + 1; } // matrix build, filter on threshold for (int i = 0; i < occurences.length; i++) { for (int j = 0; j < occurences.length; j++) { if (occurences[i][j] < threshold) { occurences[i][j] = 0; } } // print printcircosdata(pathids, titles, occurences); the text below is a sample of the output generated by the printcircosdata method. it first prints the legend (matching shorthands with actual paths). next it prints the tab-delimited circos table. link0 - /?p=411/wp-admin - storing and querying rdf data in neo4j through sail - datablend link1 - /?p=1146 - visualizing rdf schema inferencing through neo4j, tinkerpop, sail and gephi - datablend link2 - /?p=164 - big data / concise articles - datablend link3 - referral - null link4 - /?p=1400 - the joy of algorithms and nosql revisited: the mongodb aggregation framework - datablend ... datal0l1l2l3l4... l000000 l100000 l200000 l3059400197 l400000 4. use the circos power although circos can be installed on your local computer, we will use its online version to create the visualization of our data. upload your tab-delimited file and just wait a few seconds before enjoying the beautiful rendering of your site's navigation information. with just a glimpse of an eye we can already see that the l3-segment (i.e. the referrals) is significantly larger (almost 6000 navigations) compared to the others segments. the outer 3 rings visualize the total amounts of navigations that are leaving and entering this particular path. in case of referrals, no navigations have this path as target (indicated by the empty middle ring). its total segment count (inner ring) is entirely build up out of navigations that have a referral as source. the l6-segment seems to be the path that attracts the most traffic (around 2500 navigations). this segment visualizes the navigation data related to my "the joy of algorithms and nosql: a mongodb example" -article. most of its traffic is received through referrals, while a decent amount is also generated through direct (l17-segment) and search (l27-segment) traffic. the l15-segment (my blog's main page) is the only path that receives an almost equal amount of incoming and outgoing traffic. with just a few tweaks to the circos input data, we can easily focus on particular types of navigation data. in the figure below, i made sure that referral and search navigations are visualized more prominently through the use of 2 separate colors. 5. conclusions in the era of big data, visualizations are becoming crucial as they enable us to mine our large data sets for certain patterns of interest. circos specializes in a very specific type of visualization, but does its job extremely well. i would be delighted to hear about other types of visualizations for directed graphs.
March 13, 2012
by Davy Suvee
· 36,506 Views · 2 Likes
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All about JMS messages
JMS providers like ActiveMQ are based on the concept of passing one-directional messages between nodes and brokers asynchronously. A thorough knowledge of the type of messages that can be sent through a JMS middleware can simplify a lot your work in mapping the communication patterns to real code. The basic Message interface Some object members are shared by all messages: header fields, used to identify univocally a message and to route it to the right brokers and consumers. A dynamic map of properties which can be read programmatically by JMS brokers in order to filter or to route messages. A body, which is differentiated in the various implementations we'll see. Header fields The set of getJMS*() methods on the Message interface defines the available headers. Two of them are oriented to message identification: getJMSMessageID() contains a generated ID for identifying a message, unique at least for the current broker. All generated IDs start with the prefix 'ID:', but you can override it with the corresponding setter. getJMSCorrelationID() (and getJMSCorrelationID() as bytes) can link a message with another, usually one that has been sent previously. For example, a reply can carry the ID of the original message when put in another queue. Two to sender and recipient identification: getJMSDestination() returns a Destination object (a Topic or a Queue, or their temporary version) describing where the message was directed. getJMSReplyTo() is a Destination object where replies should be sent; it can be null of course. Three tune the delivery mechanism: getJMSDeliveryMode() can be DeliveryMode.NON_PERSISTENT or DeliveryMode.PERSISTENT; only persistent messages guarantee delivery in case of a crash of the brokers that transport it. getJMSExpiration() returns a timestamp indicating the expiration time of the message; it can be 0 on a message without a defined expiration. getJMSPriority() returns a 0-9 integer value (higher is better) defining the priority for delivery. It is only a best-effort value. While the remaining ones contain metadata: getJMSRedelivered() returns a boolean indicating if the message is being delivered again after a delivery which was not acknowledge. getJMSTimestamp() returns a long indicating the time of sending. getJMSType() defines a field for provider-specific or application-specific message types. Of these headers, only JMSCorrelationID, JMSReplyTo and JMSType have to be set when needed. The others are generated or managed by the send() and publish() methods if not specified (there are setters available for each of these headers.) Properties Generic properties with a String name can be added to messages and read with getBooleanProperty(), getStringProperty() and similar methods. The corresponding setters setBooleanProperty(), setStringProperty(), ... can be used for their addition. The reason for keeping some properties out of the content of the message (which a MapMessage can contain) is so they could be read before reaching the destination, for example in a JMS broker. The use case for this access to message properties is routing and filtering: downstream brokers and consumers may define a filter such as "I am interested only on messages on this Topic that have property X = 'value' and Y = 'value2'". Bodies All the subinterfaces of javax.jms.Message defined by the API provide different types of message bodies (while actual classes are defined by the providers and are not part of the API). Actual instantiation is then handled by the Session, which implements an Abstract Factory pattern. On the receival side, a cast is necessary for any message type (at least in the Java JMS Api), since only a generic Message is read. BytesMessage is the most basic type: it contains a sequence of uninterpreted bytes. Hence, it can in theory contain anything, but the generation and interpretation of the content is the client's job. BytesMessage m = session.createBytesMessage(); m.writeByte(65); m.writeBytes(new byte[] { 66, 68, 70 }); // on receival (cast shown only here) BytesMessage m = (BytesMessage) genericMessage; byte[] content = new byte[4]; m.readBytes(content); MapMessage defines a message containing an (unordered) set of key/value pairs, also called a map or dictionary or hash. However, the keys are String objects, while the values are primitives or Strings; since they are primitives, they shouldn't be null. MapMessage = session.createMapMessage(); m.setString('key', 'value'); // or m.setObject('key', 'value') to avoid specifying a type // on receival m.getString('key'); // or m.getObject('key') ObjectMessage wraps a generic Object for transmission. The Object should be Serializable. ObjectMessage m = session.createObjectMessage(); m.setObject(new ValueObject('field1', 42)); // on receival ValueObject vo = (ValueObject) m.getObject(); StreamMessage wraps a stream of primitive values of indefinite length. StreamMessage m = session.createStreamMessage(); m.writeBoolean(true); m.writeBoolean(false); m.writeBoolean(true); // receival System.out.println(m.readBoolean()); System.out.println(m.readBoolean()); System.out.println(m.readBoolean()); // prints true, false, true TextMessage wraps a String of any length. TextMessage m = session.createTextMessage("Contents"); // or use m.setText() afterwards // receival String text = m.getText(); Usually all messages are in a read-only phase after receival, so only getters can be called on them.
March 12, 2012
by Giorgio Sironi
· 62,075 Views · 1 Like
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Joins with MapReduce
i have been reading up on join implementations available for hadoop for past few days. in this post i recap some techniques i learnt during the process. the joins can be done at both map side and join side according to the nature of data sets of to be joined. reduce side join let’s take the following tables containing employee and department data. let’s see how join query below can be achieved using reduce side join. select employees.name, employees.age, department.name from employees inner join department on employees.dept_id=department.dept_id map side is responsible for emitting the join predicate values along with the corresponding record from each table so that records having same department id in both tables will end up at on same reducer which would then do the joining of records having same department id. however it is also required to tag the each record to indicate from which table the record originated so that joining happens between records of two tables. following diagram illustrates the reduce side join process. here is the pseudo code for map function for this scenario. map (k table, v rec) { dept_id = rec.dept_id tagged_rec.tag = table tagged_rec.rec = rec emit(dept_id, tagged_rec) } at reduce side join happens within records having different tags. reduce (k dept_id, list tagged_recs) { for (tagged_rec : tagged_recs) { for (tagged_rec1 : taagged_recs) { if (tagged_rec.tag != tagged_rec1.tag) { joined_rec = join(tagged_rec, tagged_rec1) } emit (tagged_rec.rec.dept_id, joined_rec) } } map side join (replicated join) using distributed cache on smaller table for this implementation to work one relation has to fit in to memory. the smaller table is replicated to each node and loaded to the memory. the join happens at map side without reducer involvement which significantly speeds up the process since this avoids shuffling all data across the network even-though most of the records not matching are later dropped. smaller table can be populated to a hash-table so look-up by dept_id can be done. the pseudo code is outlined below. map (k table, v rec) { list recs = lookup(rec.dept_id) // get smaller table records having this dept_id for (small_table_rec : recs) { joined_rec = join (small_table_rec, rec) } emit (rec.dept_id, joined_rec) } using distributed cache on filtered table if the smaller table doesn’t fit the memory it may be possible to prune the contents of it if filtering expression has been specified in the query. consider following query. select employees.name, employees.age, department.name from employees inner join department on employees.dept_id=department.dept_id where department.name="eng" here a smaller data set can be derived from department table by filtering out records having department names other than “eng”. now it may be possible to do replicated map side join with this smaller data set. replicated semi-join reduce side join with map side filtering even of the filtered data of small table doesn’t fit in to the memory it may be possible to include just the dept_id s of filtered records in the replicated data set. then at map side this cache can be used to filter out records which would be sent over to reduce side thus reducing the amount of data moved between the mappers and reducers. the map side logic would look as follows. map (k table, v rec) { // check if this record needs to be sent to reducer boolean sendtoreducer = check_cache(rec.dept_id) if (sendtoreducer) { dept_id = rec.dept_id tagged_rec.tag = table tagged_rec.rec = rec emit(dept_id, tagged_rec) } } reducer side logic would be same as the reduce side join case. using a bloom filter a bloom filter is a construct which can be used to test the containment of a given element in a set. a smaller representation of filtered dept_ids can be derived if dept_id values can be augmented in to a bloom filter. then this bloom filter can be replicated to each node. at the map side for each record fetched from the smaller table the bloom filter can be used to check whether the dept_id in the record is present in the bloom filter and only if so to emit that particular record to reduce side. since a bloom filter is guaranteed not to provide false negatives the result would be accurate. references [1] hadoop in action [2] hadoop : the definitive guide
March 12, 2012
by Buddhika Chamith
· 31,103 Views
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Using Maven's -U Command Line Option
My prefered solution was to use the Maven ‘update snapshots’ command line argument.
March 11, 2012
by Roger Hughes
· 107,121 Views · 1 Like
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Writing a simple named pipes server in C#
I solved a little problem last night when playing with named pipes. I created a named pipe that writes all output to a file. Named pipes are opened for all users on a single machine. In this post I will show you a simple class that works as a pipe server. In .NET-based languages we can use the System.IO.Pipes namespace classes to work with named pipes. Here is my simple pipe server that writes all client output to file. public class MyPipeServer { public void Run() { var sid = new SecurityIdentifier(WellKnownSidType.WorldSid, null); var rule = new PipeAccessRule(sid, PipeAccessRights.ReadWrite, AccessControlType.Allow); var sec = new PipeSecurity(); sec.AddAccessRule(rule); using (NamedPipeServerStream pipeServer = new NamedPipeServerStream ("testpipe",PipeDirection.InOut, 100, PipeTransmissionMode.Byte, PipeOptions.None, 0, 0, sec)) { pipeServer.WaitForConnection(); var read = 0; var bytes = new byte[4096]; using(var file=File.Open(@"c:\tmp\myfile.dat", FileMode.Create)) while ((read = pipeServer.Read(bytes, 0, bytes.Length)) > 0) { file.Write(bytes, 0, read); file.Flush(); } } } } Real-life pipe scenarios are usually more complex but this simple class is good to get things running like they should be.
March 10, 2012
by Gunnar Peipman
· 30,975 Views
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Best Practices for Variable and Method Naming
Use short enough and long enough variable names in each scope of code. Generally length may be 1 char for loop counters, 1 word for condition/loop variables, 1-2 words for methods, 2-3 words for classes, 3-4 words for globals. Use specific names for variables, for example "value", "equals", "data", ... are not valid names for any case. Use meaningful names for variables. Variable name must define the exact explanation of its content. Don't start variables with o_, obj_, m_ etc. A variable does not need tags which states it is a variable. Obey company naming standards and write variable names consistently in application: e.g. txtUserName, lblUserName, cmbSchoolType, ... Otherwise readability will reduce and find/replace tools will be unusable. Obey programming language standards and don't use lowercase/uppercase characters inconsistently: e.g. userName, UserName, USER_NAME, m_userName, username, ... use Camel Case (aka Upper Camel Case) for classes: VelocityResponseWriter use Lower Case for packages: com.company.project.ui use Mixed Case (aka Lower Camel Case) for variables: studentName use Upper Case for constants : MAX_PARAMETER_COUNT = 100 use Camel Case for enum class names and Upper Case for enum values. don't use '_' anywhere except constants and enum values (which are constants). For example for Java, Don't reuse same variable name in the same class in different contexts: e.g. in method, constructor, class. So you can provide more simplicity for understandability and maintainability. Don't use same variable for different purposes in a method, conditional etc. Create a new and different named variable instead. This is also important for maintainability and readability. Don't use non-ASCII chars in variable names. Those may run on your platform but may not on others. Don't use too long variable names (e.g. 50 chars). Long names will bring ugly and hard-to-read code, also may not run on some compilers because of character limit. Decide and use one natural language for naming, e.g. using mixed English and German names will be inconsistent and unreadable. Use meaningful names for methods. The name must specify the exact action of the method and for most cases must start with a verb. (e.g. createPasswordHash) Obey company naming standards and write method names consistently in application: e.g. getTxtUserName(), getLblUserName(), isStudentApproved(), ... Otherwise readability will reduce and find/replace tools will be unusable. Obey programming language standards and don't use lowercase/uppercase characters inconsistently: e.g. getUserName, GetUserName, getusername, ... For example for Java, use Mixed Case for method names: getStudentSchoolType use Mixed Case for method parameters: setSchoolName(String schoolName) Use meaningful names for method parameters, so it can documentate itself in case of no documentation.
March 10, 2012
by Cagdas Basaraner
· 154,048 Views · 5 Likes
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