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The Latest Data Engineering Topics

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Mapping Mongodb ISODate to Spring Roo Entity
I have been inserting log4j entries into a mongodb database and each entry has been given an ISODate timestamp: "timestamp" : ISODate("2012-01-17T22:30:19.839Z") To create a mapping for this, I had to manually add the timestamp as Spring Roo did not allow timestamp to be used as it was a reserved word. So I manually added: @DateTimeFormat(style="MM/dd/yyyy") private java.util.Date timestamp; But I started getting the following error: Invalid style specification: MM/dd/yyyy The stack trace for that error was: org.joda.time.format.DateTimeFormat.createFormatterForStyle(DateTimeFormat.java:702) org.joda.time.format.DateTimeFormat.patternForStyle(DateTimeFormat.java:212) com.comcast.uivr.web.LoggingController_Roo_Controller.ajc$interMethod$com_comcast_uivr_web_LoggingController_Roo_Controller$com_comcast_uivr_web_LoggingController$addDateTimeFormatPatterns(LoggingController_Roo_Controller.aj:98) com.comcast.uivr.web.LoggingController.ajc$interMethodDispatch2$com_comcast_uivr_web$addDateTimeFormatPatterns(LoggingController.java:1) com.comcast.uivr.web.LoggingController_Roo_Controller.ajc$interMethodDispatch1$com_comcast_uivr_web_LoggingController_Roo_Controller$com_comcast_uivr_web_LoggingController$addDateTimeFormatPatterns(LoggingController_Roo_Controller.aj) com.comcast.uivr.web.LoggingController_Roo_Controller.ajc$interMethod$com_comcast_uivr_web_LoggingController_Roo_Controller$com_comcast_uivr_web_LoggingController$list(LoggingController_Roo_Controller.aj:66) com.comcast.uivr.web.LoggingController.list(LoggingController.java:1) sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) java.lang.reflect.Method.invoke(Method.java:597) org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:212) org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:126) org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:96) org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:617) org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:578) org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:80) org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:900) org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:827) org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:882) org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:778) javax.servlet.http.HttpServlet.service(HttpServlet.java:617) javax.servlet.http.HttpServlet.service(HttpServlet.java:717) org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77) org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88) org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76) org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857) org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588) org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) java.lang.Thread.run(Thread.java:662) To fix this I attempted to add the ISO date format for the @DateTimeFormat @DateTimeFormat(style="yyyyMMdd'T'HHmmss.SSSZ") private java.util.Date timestamp; Which still did not work and had the error. To resolve this I shitched to use ISO.DATE_TIME as the style: @DateTimeFormat(iso=ISO.DATE_TIME) private java.util.Date timestamp; From http://www.baselogic.com/blog/development/springframework/mapping-mongodb-isodate-spring-roo-entity/
January 30, 2012
by Mick Knutson
· 23,966 Views · 2 Likes
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Visualize Maven Project Dependencies with dependency:tree and Dot Diagram Output
The dependency:tree goal of the Maven plugin dependency supports various graphical outputs from the version 2.4 up. This is how you would create a diagram showing all dependencies in the com.example group in the dot format: mvn dependency:tree -Dincludes=com.example-DappendOutput=true -DoutputType=dot -DappendOutput=true -DoutputFile=/path/to/output.dot To actually produce an image from .dot you can use one of .dot renderers, f.ex. this online dot renderer (paste into the right text box, press enter). You could also generate the output f.ex. in the graphml format & visualize it in Eclipse. From http://theholyjava.wordpress.com/2012/01/13/visualize-maven-project-dependencies-with-dependencytree-and-dot-diagram-output/
January 25, 2012
by Jakub Holý
· 31,750 Views
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Algorithm of the Week: Data Compression with Diagram Encoding and Pattern Substitution
Two variants of run-length encoding are the diagram encoding and the pattern substitution algorithms. The diagram encoding is actually a very simple algorithm. Unlike run-length encoding, where the input stream must consists of many repeating elements, “aaaaaaaa” for instance, which are very rare in a natural language, there are many so-called “diagrams” in almost any natural language. In plain English there are some diagrams such as “the”, “and”, “ing” (in the word “waiting” for example), “ a”, “ t”, “ e” and many doubled letters. Actually we can extend those diagrams by adding surrounding spaces. Thus we can encode not only “the”, but “ the “, which are 5 characters (2 spaces and 3 letters) with something shorter. On the other hand, as I said, in plain English there are too many doubled letters, which unfortunately aren’t something special for run-length encoding and the compression ratio will be small. Even worse the encoded text may happen to be longer than the input message. Let’s see some examples. Let’s say we’ve to encode the message “successfully accomplished”, which consists of four doubled letters. However to compress it with run-length encoding we’ll need at least 8 characters, which doesn’t help us a lot. // 8 chars replaced by 8 chars!? input: "successfully accomplished" output: "su2ce2sfu2ly a2complished" The problem is that if the input text contains numbers, “2” in particular, we’ve to chose an escape symbol (“@” for example), which we’ll use to mark where the encoded run begins. Thus if the input message is “2 successfully accomplished tasks”, it will be encoded as “2 su@2ce@2sfu@2ly a@2complished tasks”. Now the output message is longer!!! than the input string. // the compressed message is longer!!! input: "2 successfully accomplished" output: "2 su@2ce@2sfu@2ly a@2complished tasks" Again if the input stream contains the escape symbol, we have to find another one, and the problem is that it is often too difficult to find short escape symbol that doesn’t appear in the input text, without a full scan of the text. That is why run-length encoding isn’t a good solution when compressing plain text, where long runs rarely appear. Well, of course, there are exceptions. For example such an exception is the lossy text compression with run-length encoding. It is intuitively clear that compressing text with loss is rarely useful, especially when you’ve to decompress exactly the same text. However there are some cases that lossy compression may be useful. Such case can be removing spaces. Indeed the text “successfully accomplished” brings us exactly the same information as “successfully accomplished”. In this case we can simply remove those spaces. Indeed we can use a marker to indicate the long run of spaces like “successfully@6 accomplished” in order to decompress the input string with absolutely no loss, but we can also throw those symbols away. This desision depends on the goal. Exactly with the same goal in mind we can remove new lines and tabs, only if we’re sure that the sense of the text is preserved. Yet again, a problem is that such long runs don’t happen to occur in random texts. That is why it’s better to use diagram encoding for plain text compression instead of run-length encoding. A Few Questions After understanding the principles of the diagram encoding, let’s see some examples. In the example above it is better to replace doubled letters with something shorter. Let’s say # for “cc”, @ for “ss” and % for “ll”. Thus the input text will be compressed as “su#e@fu%y a#omplished”, which is shorter. But yet again what will happen if the input message contains one of the substitutions? Also we can’t say if there are many doubled letters and enough reasonable substitutions for them. A better approach is to replace patterns. Run-length encoding isn't a good approach for text compression, because long runs rarely appear in a natural language. Pattern Substitution The pattern substitution algorithm is a variant of the diagram encoding. As I said above in plain English a very commonly used pattern can be “ the “, which is five characters long. We can now replace it with something like “$%” for example. In this case the message “I send the message” will become “I send$%message”. However there are some obstacles to overcome. The first problem is that we need to know the language and somehow to define commonly used patterns in a dictionary. What would happen with a message written in some language we don’t know nothing about. Let’s say – Latin like the example bellow. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Cras venenatis, sapien eget suscipit placerat, justo quam blandit mauris, quis tempor ante sapien sodales augue. Praesent ut mauris quam. Phasellus scelerisque, ante quis consequat tristique, metus turpis consectetur leo, vitae facilisis sapien mi eu sapien. Praesent vitae ligula elit, et faucibus augue. Sed rhoncus sodales dolor ut gravida. In quis augue ac nulla auctor mattis sed sed libero. Donec eget purus eget enim tempor porta vitae eget diam. Mauris aliquet malesuada ipsum, non pulvinar urna vestibulum ac. Donec feugiat velit vitae nunc cursus imperdiet. Donec accumsan faucibus dictum. Phasellus sed mauris sapien. Maecenas mi metus, tincidunt sed rhoncus nec, sodales non sapien. Clearly without knowing Latin it isn’t easy to define which are those commonly used patterns. The thing is that it’s better to use pattern substitution if you know in advance the set of words and characters. The second problem is related to decompression. It is obvious that we need to define a dictionary and this dictionary must be used when decoding the message. It will be great also if we find more patterns longer than three characters. If not, the compression ratio will be low. Unfortunately such patterns aren’t very common in any natural language. Diagram encoding and pattern substitution are far more suitable for text compression than run-length encoding. In fact, pattern substitution is very effective on compressing programming languages. Application It is interesting to answer the question, how to use diagram encoding or patter substitution to compress text in natural language, especially when we don’t know the language in detail? The answer hides in the question. We wont compress natural languages, but machine language. Exactly machine (programming) languages are limited to a smaller sets of words and symbols. Isn’t it true for any programing language? Like PHP, where words like “function”, “while”, “for”, “break”, “switch”, “foreach” happen to be often in use, or HTML with its defined set of tags. Perhaps the best example is CSS, where only the values of the properties can vary. CSS files also tend to have multiple new lines, tabs and spaces, which only humans read. The question here is why should we compress those file types. It’s clear that after the compression they will be completely useless, both for humans and machines. Yes, that is true, but what if we have to store versions of those files into a DB. Kind of a backup. Imagine you’re working for a web hosting company that has to store daily versions of the sites it’s hosting. Thus the volume of stored information even for small companies hosting only few sites can be enormous. The problem is that compressing those files with some conventional compressing tool isn’t a good idea. Thus we’ve to save a copy of the entire site every day, but as we know the difference between daily versions of a site can be small. A version control system is another solution, but then you’ve to store the plain text of the files. Perhaps a better approach is to compress the text using pattern substitution and then saving only differences – kind of version control, which can be done with “relative encoding”. Using the above method we can save lots of disk space and in the same time we can compress/decompress easily. Another good thing is that you can save only changes to the initial files, like version control, which can also be compressed. Implementation The implementation of this algorithm is again on PHP and tries only to describe the main principles of compression. In this case I tried to compress a CSS file using the compression above. Although this example is quite primitive we can see some interesting facts. First of all you only need encoding and decoding dictionaries. Practically the encoding and decoding processes are equal, so you don’t need to implement two different functions. Here in this example a native PHP function is used – str_replace, because the purpose of this algorithm is not to describe pattern substitution techniques, but pattern substitution. It assumes that today’s programming languages have string manipulation functions for the purposes of this task. $str = file_get_contents('large_style_file.css'); $encoding_dict = array( "\n" => '$0', 'text' => '$1', 'color' => '$2', 'display' => '$3', 'font' => '$4', 'width' => '$5', 'height' => '$6', ' ' => '', ); function replace_patterns($input, $dict) { foreach ($dict as $pattern => $replace) { $input = str_replace($pattern, $replace, $input); } return $input; } $result = replace_patterns($str, $encoding_dict); By only replacing few CSS properties I achieved almost 40% of compression ratio (as shown the diagram bellow). The initial file is 202 KB, while compressed it’s only 131 KB. Of course, it all depends on the CSS file, but how about replacing all property names with shorter ones. Perhaps then the compression will be even better. Source: http://www.stoimen.com/blog/2012/01/23/computer-algorithms-data-compression-with-diagram-encoding-and-pattern-substitution/
January 24, 2012
by Stoimen Popov
· 23,940 Views
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Streaming Files from MongoDB GridFS
Not too long ago I tweeted what I felt was a small triumph on my latest project, streaming files from MongoDB GridFS for downloads (rather than pulling the whole file into memory and then serving it up). I promised to blog about this but unfortunately my specific usage was a little coupled to the domain on my project so I couldn’t just show it off as is. So I’ve put together an example node.js+GridFS application and shared it on github and will use this post to explain how I accomplished it. GridFS Module First off, special props go to tjholowaychuk who responded in the #node.js irc channel when I asked if anyone has had luck with using GridFS from mongoose. A lot of my resulting code is derived from an gist he shared with me. Anyway, to the code. I’ll describe how I’m using gridfs and after setting the ground work illustrate how simple it is to stream files from GridFS. I created a gridfs module that basically accesses GridStore through mongoose (which I use throughout my application) that can also share the db connection created when connecting mongoose to the mongodb server. mongoose = require "mongoose" request = require "request" GridStore = mongoose.mongo.GridStore Grid = mongoose.mongo.Grid ObjectID = mongoose.mongo.BSONPure.ObjectID We can’t get files from mongodb if we cannot put anything into it, so let’s create a putFile operation. exports.putFile = (path, name, options..., fn) -> db = mongoose.connection.db options = parse(options) options.metadata.filename = name new GridStore(db, name, "w", options).open (err, file) -> return fn(err) if err file.writeFile path, fn parse = (options) -> opts = {} if options.length > 0 opts = options[0] if !opts.metadata opts.metadata = {} opts This really just delegates to the putFile operation that exists in GridStore as part of the mongodb module. I also have a little logic in place to parse options, providing defaults if none were provided. One interesting feature to note is that I store the filename in the metadata because at the time I ran into a funny issue where files retrieved from gridFS had the id as the filename (even though a look in mongo reveals that the filename is in fact in the database). Now the get operation. The original implementation of this simply passed the contents as a buffer to the provided callback by calling store.readBuffer(), but this is now changed to pass the resulting store object to the callback. The value in this is that the caller can use the store object to access metadata, contentType, and other details. The user can also determine how they want to read the file (either into memory or using a ReadableStream). exports.get = (id, fn) -> db = mongoose.connection.db id = new ObjectID(id) store = new GridStore(db, id, "r", root: "fs" ) store.open (err, store) -> return fn(err) if err # band-aid if "#{store.filename}" == "#{store.fileId}" and store.metadata and store.metadata.filename store.filename = store.metadata.filename fn null, store This code just has a small blight in that it checks to see if the filename and fileId are equal. If they are, it then checks to see if metadata.filename is set and sets store.filename to the value found there. I’ve tabled the issue to investigate further later. The Model In my specific instance, I wanted to attach files to a model. In this example, let’s pretend that we have an Application for something (job, a loan application, etc) that we can attach any number of files to. Think of tax receipts, a completed application, other scanned documents. ApplicationSchema = new mongoose.Schema( name: String files: [ mongoose.Schema.Mixed ] ) ApplicationSchema.methods.addFile = (file, options, fn) -> gridfs.putFile file.path, file.filename, options, (err, result) => @files.push result @save fn Here I define files as an array of Mixed object types (meaning they can be anything) and a method addFile which basically takes an object that at least contains a path and filename attribute. It uses this to save the file to gridfs and stores the resulting gridstore file object in the files array (this contains stuff like an id, uploadDate, contentType, name, size, etc). Handling Requests This all plugs in to the request handler to handle form submissions to /new. All this entails is creating an Application model instance, adding the uploaded file from the request (in this case we named the file field “file”, hence req.files.file) and saving it. app.post "/new", (req, res) -> application = new Application() application.name = req.body.name opts = content_type: req.files.file.type application.addFile req.files.file, opts, (err, result) -> res.redirect "/" Now the sum of all this work allows us to reap the rewards by making it super simple to download a requested file from gridFS. app.get "/file/:id", (req, res) -> gridfs.get req.params.id, (err, file) -> res.header "Content-Type", file.type res.header "Content-Disposition", "attachment; filename=#{file.filename}" file.stream(true).pipe(res) Here we simply look up a file by id and use the resulting file object to set Content-Type and Content-Disposition fields and finally make use of ReadableStream::pipe to write the file out to the response object (which is an instance of WritableStream). This is the piece of magic that streams data from MongoDB to the client side. Ideas This is just a humble beginning. Other ideas include completely encapsulating gridfs within the model. Taking things further we could even turn the gridfs model into a mongoose plugin to allow completely blackboxed usage of gridfs. Feel free to check the project out and let me know if you have ideas to take it even further. Fork away! Source: http://blog.james-carr.org/2012/01/09/streaming-files-from-mongodb-gridfs/
January 23, 2012
by James Carr
· 22,449 Views
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The Persistence Layer with Spring Data JPA
This is the forth of a series of articles about Persistence with Spring. This article will focus on the configuration and implementation of the persistence layer with Spring 3.1, JPA and Spring Data. For a step by step introduction about setting up the Spring context using Java based configuration and the basic Maven pom for the project, see this article. The Persistence with Spring series: Part 1 – The Persistence Layer with Spring 3.1 and Hibernate Part 3 – The Persistence Layer with Spring 3.1 and JPA Part 5 – Transaction configuration with JPA and Spring 3.1 No More DAO implementations As I discussed in a previous post, the DAO layer usually consists of a lot of boilerplate code that can and should be simplified. The advantages of such a simplification are many fold: a decrease in the number of artifacts that need to be defined and maintained, simplification and consistency of data access patterns and consistency of configuration. Spring Data takes this simplification one step forward and makes it possible to remove the DAO implementations entirely – the interface of the DAO is now the only artifact that need to be explicitly defined. The Spring Data managed DAO In order to start leveraging the Spring Data programming model with JPA, a DAO interface needs to extend the JPA specific Repository interface - JpaRepository – in Spring’s interface hierarchy. This will enable Spring Data to find this interface and automatically create an implementation for it. Also, by extending the interface we get most if not all relevant CRUD generic methods for standard data access available in the DAO. Defining custom access method and queries As discussed, by implementing one of the Repository interfaces, the DAO will already have some basic CRUD methods (and queries) defined and implemented. To define more specific access methods, Spring JPA supports quite a few options – you can either simply define a new method in the interface, or you can provide the actual JPQ query by using the @Query annotation. A third option to define custom queries is to make use of JPA Named Queries, but this has the disadvantage that it either involves XML or burdening the domain class with the queries. In addition to these, Spring Data introduces a more flexible and convenient API, similar to the JPA Criteria API, only more readable and reusable. The advantages of this API will become more pronounced when dealing with a large number of fixed queries that could potentially be more concisely expressed through a smaller number of reusable blocks that keep occurring in different combinations. Automatic Custom Queries When Spring Data creates a new Repository implementation, it analyzes all the methods defined by the interfaces and tries to automatically generate queries from the method name. While this has limitations, it is a very powerful and elegant way of defining new custom access methods with very little effort. For example, if the managed entity has a name field (and the Java Bean standard getter and setter for that field), defining the findByName method in the DAO interface will automatically generate the correct query: public interface IFooDAO extends JpaRepository< Foo, Long >{ Foo findByName( final String name ); } This is a relatively simple example; a much larger set of keywords is supported by query creation mechanism. In the case that the parser cannot match the property with the domain object field, the following exception is thrown: java.lang.IllegalArgumentException: No property nam found for type class org.rest.model.Foo Manual Custom Queries In addition to deriving the query from the method name, a custom query can be manually specified with the method level @Query annotation. For even more fine grained control over the creation of queries, such as using named parameters or modifying existing queries, the reference is a good place to start. Spring Data transaction configuration The actual implementation of the Spring Data managed DAO – SimpleJpaRepository – uses annotations to define and configure transactions. A read only @Transactional annotation is used at the class level, which is then overridden for the non read-only methods. The rest of the transaction semantics are default, but these can be easily overridden manually per method. Exception Translation without the template One of the responsibilities of Spring ORM templates (JpaTemplate, HibernateTemplate) is exception translation – translating JPA exceptions – which tie the API to JPA – to Spring’s DataAccessException hierarchy. Without the template to do that, exception translation can still be enabled by annotating the DAOs with the @Repository annotation. That, coupled with a Spring bean postprocessor will advice all @Repository beans with all the implementations of PersistenceExceptionTranslator found in the Container – to provide exception translation without using the template. The fact that exception translation is indeed active can easily be verified with an integration test: @Test( expected = DataAccessException.class ) public void whenAUniqueConstraintIsBroken_thenSpringSpecificExceptionIsThrown(){ String name = "randomName"; this.service.save( new Foo( name ) ); this.service.save( new Foo( name ) ); } Exception translation is done through proxies; in order for Spring to be able to create proxies around the DAO classes, these must not be declared final. Spring Data Configuration To activate the Spring JPA repository support, the jpa namespace is defined and used to specify the package where to DAO interfaces are located: At this point, there is no equivalent Java based configuration – support for it is however in the works. The Spring Java or XML configuration The JPA configuration with Spring 3.1 has already been carefully discussed in the previous article of this series. Spring Data also takes advantage of the Spring support for the JPA @PersistenceContext annotation which it uses to wire the EntityManager into the Spring factory bean responsible with creating the actual DAO implementations – JpaRepositoryFactoryBean. In addition to the already discussed configuration, there is one last missing piece – including the Spring Data XML configuration in the overall persistence configuration: @Configuration @EnableTransactionManagement @ImportResource( "classpath*:*springDataConfig.xml" ) public class PersistenceJPAConfig{ ... } The Maven configuration In addition to the Maven configuration for JPA defined in a previous article, the spring-data-jpa dependency is addeed: org.springframework.data spring-data-jpa 1.0.2.RELEASE Conclusion This article covered the configuration and implementation of the persistence layer with Spring 3.1, JPA 2 and Spring JPA (part of the Spring Data umbrella project), using both XML and Java based configuration. The various method of defining more advanced custom queries are discussed, as well as configuration with the new jpa namespace and transactional semantics. The final result is a new and elegant take on data access with Spring, with almost no actual implementation work. You can check out the full implementation in the github project. From the originalThe Persistence Layer with Spring Data JPA of the Persistence with Spring series
January 20, 2012
by Eugen Paraschiv
· 155,055 Views · 2 Likes
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Algorithm of the Week: Data Compression with Bitmaps
In my previous post we saw how to compress data consisting of very long runs of repeating elements. This type of compression is known as “run-length encoding” and can be very handy when transferring data with no loss. The problem is that the data must follow a specific format. Thus the string “aaaaaaaabbbbbbbb” can be compressed as “a8b8”. Now a string with length 16 can be compressed as a string with length 4, which is 25% of its initial length without loosing any information. There will be a problem in case the characters (elements) were dispersed in a different way. What would happen if the characters are the same, but they don’t form long runs? What if the string was “abababababababab”? The same length, the same characters, but we cannot use run-length encoding! Indeed using this algorithm we’ll get at best the same string. In this case, however, we can see another fact. The string consists of too many repeating elements, although not arranged one after another. We can compress this string with a bitmap. This means that we can save the positions of the occurrences of a given element with a sequence of bits, which can be easily converted into a decimal value. In the example above the string “abababababababab” can be compressed as “1010101010101010”, which is 43690 in decimals, and even better AAAA in hexadecimal. Thus the long string can be compressed. When decompressing (decoding) the message we can convert again from decimal/hexadecimal into binary and match the occurrences of the characters. Well, the example above is too simple, but let’s say only one of the characters is repeating and the rest of the string consists of different characters like this: “abacadaeafagahai”. Then we can use bitmap only for the character “a” – “1010101010101010” and compress it as “AAAA bcdefghi”. As you can see all the example strings are exactly 16 characters and that is a limitation. To use bitmaps with variable length of the data is a bit tricky and it is not always easy (if possible) to decompress it. Basically bitmap compression saves the positions of an element that is repeated very often in the message! In the other hand bitmap compression is not only applicable on strings. We can compress also arrays, objects or any kind of data. The example from my previous post is very suitable. Then we had to transfer a large array from a server to the client (browser) using JSON. The data then was very suitable for “run-length encoding”. Now let’s assume we have the same data – a set of different years, which this time are dispersed in a different way. $data = array( 0 => 1991, 1 => 1992, 2 => 1993, 3 => 1994, 4 => 1991, 5 => 1992, 6 => 1993, 7 => 1992, 8 => 1991, 9 => 1991, 10 => 1991, 11 => 1992, 12 => 1992, 13 => 1991, 14 => 1991, 15 => 1992, ... ); The JSON will encoded message will be the following (a simple but yet very large javascript array). [1991,1992,1993,1994,1991,1992,1993,1992,1991,1991,1991,1992,1992,1991,1991,1992, ...] However if we use bitmap compression we’ll get a “shorter” array. $data = array( 0 => array(1991, '1000100011100110'), 1 => array(1992, '0100010100011001'), 2 => array(1993, '0010001000000000'), 3 => array(1994, '0001000000000000'), ); Now the JSON is: [[1991,"1000100011100110"],[1992,"0100010100011001"],[1993,"0010001000000000"],[1994,"0001000000000000"]] It is obvious that the compression ratio is getting better and better as the uncompressed data grows. In fact, most of us know bitmap compression from images, because this algorithm is largely used for image compression. We can imagine how successful it can be when compressing black and white images (as black and white can be represented as 0 and 1s). Actually it is used for more than two colors (256 for instance) and again the level of compression is very high. Implementation The following implementation on PHP aims only to illustrate the bitmap compressing algorithm. As we know this algorithm can be applicable for any kind of data structures. // too many repeating "a" characters $msg = 'aazahalavaatalawacamaahakafaaaqaaaiauaacaaxaauaxaaaaaapaayatagaaoafaawayazavaaaazaaabararaaaaakakaaqaarazacajaazavanazaaaeanaaoajauaaaaaxalaraaapabataaavaaab'; function bitmap($message) { $i = 0; $bits = $rest = ''; while ($v = $message[$i]) { if ($v == 'a') { $bits .= '1'; } else { $bits .= '0'; $rest .= $v; } $i++; } return number_format(bindec($bits), 0, '.', '') . $rest;; } echo bitmap($msg); // uncompressed: acaaaaadaaaabalaaeaaaaganaaxakaavawamaasavajawaaaayaauaaadalanagaeaeamaarafalaazaaaiasaanaahaaazaraxaalaahaaawaaajasamahaajaakarapanaakaoakaanawalaacamauaamaal // compressed: 152299251941730035874325065523548237677352452096zhlvtlwcmhkfqiucxuxpytgofwyzvzbrrkkqrzcjzvnzenojuxlrpbtvb Application This algorithm is very useful when there is an element in our data that repeats very often, so you need to investigate the nature of the data you want to compress. Actually because of this fact this algorithm is used for image compression as PNG8 or GIF. Source: http://www.stoimen.com/blog/2012/01/16/computer-algorithms-data-compression-with-bitmaps/
January 17, 2012
by Stoimen Popov
· 20,412 Views
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Mocking of 'Open' as a Context Manager Made Simple In Python
Using open as a context manager is a great way to ensure your file handles are closed properly and is becoming common: with open('/some/path', 'w') as f: f.write('something') The issue is that even if you mock out the call to open it is the returned object that is used as a context manager (and has __enter__ and __exit__ called). Using MagicMock from the mock library, we can mock out context managers very simply. However, mocking open is fiddly enough that a helper function is useful. Here mock_open creates and configures a MagicMock that behaves as a file context manager. from mock import inPy3k, MagicMock if inPy3k: file_spec = ['_CHUNK_SIZE', '__enter__', '__eq__', '__exit__', '__format__', '__ge__', '__gt__', '__hash__', '__iter__', '__le__', '__lt__', '__ne__', '__next__', '__repr__', '__str__', '_checkClosed', '_checkReadable', '_checkSeekable', '_checkWritable', 'buffer', 'close', 'closed', 'detach', 'encoding', 'errors', 'fileno', 'flush', 'isatty', 'line_buffering', 'mode', 'name', 'newlines', 'peek', 'raw', 'read', 'read1', 'readable', 'readinto', 'readline', 'readlines', 'seek', 'seekable', 'tell', 'truncate', 'writable', 'write', 'writelines'] else: file_spec = file def mock_open(mock=None, data=None): if mock is None: mock = MagicMock(spec=file_spec) handle = MagicMock(spec=file_spec) handle.write.return_value = None if data is None: handle.__enter__.return_value = handle else: handle.__enter__.return_value = data mock.return_value = handle return mock >>> m = mock_open() >>> with patch('__main__.open', m, create=True): ... with open('foo', 'w') as h: ... h.write('some stuff') ... >>> m.assert_called_once_with('foo', 'w') >>> m.mock_calls [call('foo', 'w'), call().__enter__(), call().write('some stuff'), call().__exit__(None, None, None)] >>> handle = m() >>> handle.write.assert_called_once_with('some stuff') And for reading files, using a StringIO to represent the file handle: >>> from StringIO import StringIO >>> m = mock_open(data=StringIO('foo bar baz')) >>> with patch('__main__.open', m, create=True): ... with open('foo') as h: ... result = h.read() ... >>> m.assert_called_once_with('foo') >>> assert result == 'foo bar baz' Note that the StringIO will only be used for the data if open is used as a context manager. If you just configure and use mocks they will work whichever way open is used. This helper function will be built into mock 0.9. Source: http://www.voidspace.org.uk/python/weblog/arch_d7_2012_01_07.shtml
January 15, 2012
by Michael Foord
· 18,183 Views
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Big Data Chapter Excerpt: Implementing Schemas with Apache Thrift
This is an excerpt from the upcoming Manning book about Big Data. Big Data Principles and Best Practices of Scalable Realtime Data Systems By Nathan Marz and Samuel E. Ritchie Thrift is a widely used project that originated at Facebook. It can be used for making language-neutral RPC servers, but developers use it for its schema-creation capabilities. In this article based on chapter 2, author Nathan Marz discusses workhorses of Thrift—the struct and union type definitions—and Thrift’s built-in mechanisms for evolving a schema over time. You may also be interested in… Thrift is a widely used project that originated at Facebook. It can be used for making language-neutral RPC servers, but developers use it for its schema-creation capabilities. The workhorses of Thrift are the struct and union type definitions, and Thrift has built-in mechanisms for evolving a schema over time. Orginally Authored by Nathan Marz and Samuel E. Ritchie Structs The following code shows how to define a struct using the Thrift Interface Definition Language (IDL). Defining a struct is like defining a class in an object-oriented language: you specify all the data the object contains. The difference is that a Thrift struct only contains data and doesn't specify any extra behavior for the object. Fields in a struct can be: Primitive types like strings, ints, longs, and doubles. In the Thrift IDL, these are referred to as string, i32, i64, and double, respectively. Collections of other types. Thrift supports list, map, and set. Another Thrift struct or union. struct Person { 1: string twitter_username; 2: string full_name; 3: list interests; } The following code listing shows how to serialize a struct with Java. As you can see, we're using ArrayList, a native Java data structure, as part of the Person object. List interests = new ArrayList() {{ add("hadoop"); add("nosql"); }; Person person = new Person("joesmith", "Joe Smith", interests); TSerializer serializer = new TSerializer(); byte[] serialized = serializer.serialize(person); Here's how to deserialize a Person object in Python. When the object is deserialized, it will be using native Python data structures for any collection types. person = Person() deserialize(person, serialized_bytes) Fields in structs can be defined as being either required or optional. If a field is defined as required, than a value for that field must be provided or else Thrift will give an error upon serialization or deserialization. If a field is optional, the value will be null if not provided. You should always declare fields as being either required or optional. The following code listing shows how to define a struct containing required and optional fields. struct Tweet { 1: required string text; 2: required i64 id; 3: required i64 timestamp; 4: required Person person; 5: optional i64 response_to_tweet_id; Unions You can also define unions in Thrift. A union is a struct that must have exactly one field set. Unions are useful for representing polymorphic data. The following listing shows how to define a "PersonID" using a Thrift union that can be one of many different kinds of identifiers. union PersonID { 1: string email; 2: i64 facebook_id; 3: i64 twitter_id; } Evolving a schema Thrift is designed so that schemas can be evolved over time. The key to evolving Thrift schemas over time is the numeric identifiers used for every field. Those ids are used to identify fields in their serialized form. When you want to change the schema but still be backward compatible with existing data, you must obey the following rules. Fields may be renamed. This is because the serialized form of an object uses the field ids to identify fields, not the names. Fields may be removed, but you must be sure never to reuse that field id. When deserializing, Thrift will skip over any fields that don't match an id it's expecting. So the data for that field will just be ignored in the existing data. If you were to reuse that field id, Thrift will try to deserialize that old data into your new field which will lead to either invalid or incorrect data. Only optional fields can be added to existing structs. You can't add required fields because existing data won't have that field and will not be deserializable. Note that this point does not apply to unions since unions have no notion of required and optional fields. Summary In a relational database, the schema language is part of the database system and is integrated with how the database stores and processes that data. In the Big Data world, you use your own serialization framework that's separate from the storage and processing pieces. You get the flexibility to fine-tune this component to work exactly as needed to fit your data model. There are a few different open source serialization frameworks available, namely Thrift, Protocol Buffers, and Avro. We discussed our favorite, Apache Thrift, because it’s mature and supports most languages, but you could use any of these tools for defining a schema. Here are some other Manning titles you might be interested in: MongoDB in Action Kyle Banker RabbitMQ in Action Alvaro Videla and Jason J.W. Williams Hadoop in Action Chuck Lam Last updated: January 11, 2012
January 12, 2012
by Chris Smith
· 11,672 Views
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Local and Distributed Graph Traversal Engines
in the graph database space, there are two types of traversal engines: local and distributed. local traversal engines are typically for single-machine graph databases and are used for real-time production applications. distributed traversal engines are typically for multi-machine graph databases and are used for batch processing applications. this divide is quite sharp in the community, but there is nothing that prevents the unification of both models. a discussion of this divide and its unification is presented in this post. local traversal engines in a local traversal engine, there is typically a single processing agent that obeys a program. the agent is called a traverser and the program it follows is called a path description . in gremlin , a friend-of-a-friend path description is defined as such: g.v(1).oute('friend').inv.oute('friend').inv when this path description is interpreted by a traverser over a graph, an instance of the description is realized as actual paths in the graph that match that description. for example, the gremlin traverser starts at vertex 1 and then steps to its outgoing friend -edges. next, it will move to the head/target vertices of those edges (i.e. vertices 3 and 4). after that, it will go to the friend -edges of those vertices and finally, to the head of the previous edges (i.e. vertices 6 and 7). in this way, a single traverser is following all the paths that are exposed with each new atomic graph operation (i.e. each new step after a .). the abstract syntax being: step.step.step . what is returned by this friend-of-a-friend path description, on the example graph diagrammed, is vertices 6 and 7. in many situations, its not the end of the path that is desired, but some side-effect of the traversal. for example, as the traverser walks it can update some global data structure such as a ranking of the vertices. this idea is presented in the path description below, where the oute.inv path is looped over 1000 times. each time a vertex is traversed over, the map m is updated. this global map m maintains keys that are vertices and values that denote the number of times that each vertex has been touched ( groupcount ‘s behavior). m = [:] g.v(1).oute.inv.groupcount(m).loop(3){it.loops < 1000} the local traversal engine pattern is abstractly diagrammed on the right, where a single traverser is obeying some path description ( a.b.c ) and in doing so, moving around on a graph and updating a global data structure (the red boxed map). given the need for traversers to move from element to element, graph databases of this form tend to support strong data locality by means of a direct-reference graph data structure (i.e. vertices have pointers to edges and edges to vertices). a few examples of such graph databases include neo4j , orientdb , and dex . distributed traversal engines in a distributed traversal engine, a traversal is represented as a flow of messages between the elements of the graph. generally, each element (e.g. vertex) is operating independently of the other elements. each element is seen as its own processor with its own (usually homogenous) program to execute. elements communicate with each other via message passing . when no more messages have been passed, the traversal is complete and the results of the traversal are typically represented as a distributed data structure over the elements. graph databases of this nature tend to use the bulk synchronous parallel model of distributed computing. each step is synchronized in a manner analogous to a clock cycle in hardware. instances of this model include agrapa , pregel , trinity , and goldenorb . an example of distributed graph traversing is now presented using a ranking algorithm in java. [ note : in this example, edges are not first class citizens. this is typical of the state of the art in distributed traversal engines. they tend to be for single-relational, unlabeled-edge graphs.] public void evaluatestep(int step) { if(!this.inbox.isempty() && step < 1000) { this.rank = this.rank + this.inbox.size(); for(vertex vertex : this.adjacentvertices()) { for(int i=0; i
January 10, 2012
by Marko Rodriguez
· 8,559 Views
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Solr Select Query GET vs POST Request
Learn the differences between GET and POST requests.
January 10, 2012
by Bas De Nooijer
· 24,385 Views
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Searching relational content with Lucene's BlockJoinQuery
Lucene's 3.4.0 release adds a new feature called index-time join (also sometimes called sub-documents, nested documents or parent/child documents), enabling efficient indexing and searching of certain types of relational content. Most search engines can't directly index relational content, as documents in the index logically behave like a single flat database table. Yet, relational content is everywhere! A job listing site has each company joined to the specific listings for that company. Each resume might have separate list of skills, education and past work experience. A music search engine has an artist/band joined to albums and then joined to songs. A source code search engine would have projects joined to modules and then files. Perhaps the PDF documents you need to search are immense, so you break them up and index each section as a separate Lucene document; in this case you'll have common fields (title, abstract, author, date published, etc.) for the overall document, joined to the sub-document (section) with its own fields (text, page number, etc.). XML documents typically contain nested tags, representing joined sub-documents; emails have attachments; office documents can embed other documents. Nearly all search domains have some form of relational content, often requiring more than one join. If such content is so common then how do search applications handle it today? One obvious "solution" is to simply use a relational database instead of a search engine! If relevance scores are less important and you need to do substantial joining, grouping, sorting, etc., then using a database could be best overall. Most databases include some form a text search, some even using Lucene. If you still want to use a search engine, then one common approach is to denormalize the content up front, at index-time, by joining all tables and indexing the resulting rows, duplicating content in the process. For example, you'd index each song as a Lucene document, copying over all fields from the song's joined album and artist/band. This works correctly, but can be horribly wasteful as you are indexing identical fields, possibly including large text fields, over and over. Another approach is to do the join yourself, outside of Lucene, by indexing songs, albums and artist/band as separate Lucene documents, perhaps even in separate indices. At search-time, you first run a query against one collection, for example the songs. Then you iterate through all hits, gathering up (joining) the full set of corresponding albums and then run a second query against the albums, with a large OR'd list of the albums from the first query, repeating this process if you need to join to artist/band as well. This approach will also work, but doesn't scale well as you may have to create possibly immense follow-on queries. Yet another approach is to use a software package that has already implemented one of these approaches for you! elasticsearch, Apache Solr, Apache Jackrabbit, Hibernate Search and many others all handle relational content in some way. With BlockJoinQuery you can now directly search relational content yourself! Let's work through a simple example: imagine you sell shirts online. Each shirt has certain common fields such as name, description, fabric, price, etc. For each shirt you have a number of separate stock keeping units or SKUs, which have their own fields like size, color, inventory count, etc. The SKUs are what you actually sell, and what you must stock, because when someone buys a shirt they buy a specific SKU (size and color). Maybe you are lucky enough to sell the incredible Mountain Three-wolf Moon Short Sleeve Tee, with these SKUs (size, color): small, blue small, black medium, black large, gray Perhaps a user first searches for "wolf shirt", gets a bunch of hits, and then drills down on a particular size and color, resulting in this query: name:wolf AND size=small AND color=blue which should match this shirt. name is a shirt field while the size and color are SKU fields. But if the user drills down instead on a small gray shirt: name:wolf AND size=small AND color=gray then this shirt should not match because the small size only comes in blue and black. How can you run these queries using BlockJoinQuery? Start by indexing each shirt (parent) and all of its SKUs (children) as separate documents, using the new IndexWriter.addDocuments API to add one shirt and all of its SKUs as a single document block. This method atomically adds a block of documents into a single segment as adjacent document IDs, which BlockJoinQuery relies on. You should also add a marker field to each shirt document (e.g. type = shirt), as BlockJoinQuery requires a Filter identifying the parent documents. To run a BlockJoinQuery at search-time, you'll first need to create the parent filter, matching only shirts. Note that the filter must use FixedBitSet under the hood, like CachingWrapperFilter: Filter shirts = new CachingWrapperFilter( new QueryWrapperFilter( new TermQuery( new Term("type", "shirt")))); Create this filter once, up front and re-use it any time you need to perform this join. Then, for each query that requires a join, because it involves both SKU and shirt fields, start with the child query matching only SKU fields: BooleanQuery skuQuery = new BooleanQuery(); skuQuery.add(new TermQuery(new Term("size", "small")), Occur.MUST); skuQuery.add(new TermQuery(new Term("color", "blue")), Occur.MUST); Next, use BlockJoinQuery to translate hits from the SKU document space up to the shirt document space: BlockJoinQuery skuJoinQuery = new BlockJoinQuery( skuQuery, shirts, ScoreMode.None); The ScoreMode enum decides how scores for multiple SKU hits should be aggregated to the score for the corresponding shirt hit. In this query you don't need scores from the SKU matches, but if you did you can aggregate with Avg, Max or Total instead. Finally you are now free to build up an arbitrary shirt query using skuJoinQuery as a clause: BooleanQuery query = new BooleanQuery(); query.add(new TermQuery(new Term("name", "wolf")), Occur.MUST); query.add(skuJoinQuery, Occur.MUST); You could also just run skuJoinQuery as-is if the query doesn't have any shirt fields. Finally, just run this query like normal! The returned hits will be only shirt documents; if you'd also like to see which SKUs matched for each shirt, use BlockJoinCollector: BlockJoinCollector c = new BlockJoinCollector( Sort.RELEVANCE, // sort 10, // numHits true, // trackScores false // trackMaxScore ); searcher.search(query, c); The provided Sort must use only shirt fields (you cannot sort by any SKU fields). When each hit (a shirt) is competitive, this collector will also record all SKUs that matched for that shirt, which you can retrieve like this: TopGroups hits = c.getTopGroups( skuJoinQuery, skuSort, 0, // offset 10, // maxDocsPerGroup 0, // withinGroupOffset true // fillSortFields ); Set skuSort to the sort order for the SKUs within each shirt. The first offset hits are skipped (use this for paging through shirt hits). Under each shirt, at most maxDocsPerGroup SKUs will be returned. Use withinGroupOffset if you want to page within the SKUs. If fillSortFields is true then each SKU hit will have values for the fields from skuSort. The hits returned by BlockJoinCollector.getTopGroups are SKU hits, grouped by shirt. You'd get the exact same results if you had denormalized up-front and then used grouping to group results by shirt. You can also do more than one join in a single query; the joins can be nested (parent to child to grandchild) or parallel (parent to child1 and parent to child2). However, there are some important limitations of index-time joins: The join must be computed at index-time and "compiled" into the index, in that all joined child documents must be indexed along with the parent document, as a single document block. Different document types (for example, shirts and SKUs) must share a single index, which is wasteful as it means non-sparse data structures like FieldCache entries consume more memory than they would if you had separate indices. If you need to re-index a parent document or any of its child documents, or delete or add a child, then the entire block must be re-indexed. This is a big problem in some cases, for example if you index "user reviews" as child documents then whenever a user adds a review you'll have to re-index that shirt as well as all its SKUs and user reviews. There is no QueryParser support, so you need to programmatically create the parent and child queries, separating according to parent and child fields. The join can currently only go in one direction (mapping child docIDs to parent docIDs), but in some cases you need to map parent docIDs to child docIDs. For example, when searching songs, perhaps you want all matching songs sorted by their title. You can't easily do this today because the only way to get song hits is to group by album or band/artist. The join is a one (parent) to many (children), inner join. As usual, patches are welcome! There is work underway to create a more flexible, but likely less performant, query-time join capability, which should address a number of the above limitations. Source: http://blog.mikemccandless.com/2012/01/searching-relational-content-with.html
January 9, 2012
by Michael Mccandless
· 14,850 Views
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The Persistence Layer with Spring 3.1 and JPA
1. Overview This is the third of a series of articles about Persistence with Spring. This article will focus on the configuration and implementation of Spring with JPA. For a step by step introduction about setting up the Spring context using Java based configuration and the basic Maven pom for the project, see this article. The Persistence with Spring series: Part 1 – The Persistence Layer with Spring 3.1 and Hibernate Part 2 – Simplifying the Data Access Layer with Spring and Java Generics Part 4 – The Persistence Layer with Spring Data JPA Part 5 – Transaction configuration with JPA and Spring 3.1 2. No More Spring Templates As of Spring 3.1, the JpaTemplate and the corresponding JpaDaoSupport have been deprecated in favor of using the native Java Persistence API. Also, both of these classes are only relevant for JPA 1 (from the JpaTemplate javadoc): Note that this class did not get upgraded to JPA 2.0 and never will. As a consequence, it is now best practice to use the Java Persistence API directly instead of the JpaTemplate, which will effectively decouple the DAO layer implementation from Spring entirely. Exception Translation without the template One of the responsibilities of JpaTemplate is exception translation – translating the low level exceptions – which tie the API to JPA – into higher level, generic Spring exceptions. Without the template to do that, exception translation can still be enabled by annotating the DAOs with the @Repository annotation. That, coupled with a Spring bean postprocessor will advice all @Repository beans with all the implementations of PersistenceExceptionTranslator found in the Container – to provide exception translation without using the template. Exception translation is done through proxies; in order for Spring to be able to create proxies around the DAO classes, these must not be declared final. Injecting the JPA EntityManager with Spring without the template The EntityManager is the API of the persistence context; this can be injected directly in the DAO. The Spring Container is capable of acting as a JPA container and of injecting the EntityManager by honoring the @PersistenceContext (both as field-level and a method-level annotation). For this to work, the PersistenceAnnotationBeanPostProcessor bean must exist in the Spring Container. The bean can be either created explicitly by defining it in the configuration, or automatically, by defining context:annotation-config or context:component-scan in the configuration. 3. The Spring Java configuration The EntityManager is set up in the configuration by creating a Spring factory bean to manage it; this will allow the PersistenceAnnotationBeanPostProcessor to retrieve it from the Container. There are two options to set this up – either the simpler LocalEntityManagerFactoryBean or the more flexible LocalContainerEntityManagerFactoryBean. The latter option is used here, so that additional properties can be configured on it: @Configuration @EnableTransactionManagement public class PersistenceJPAConfig{ @Bean public LocalContainerEntityManagerFactoryBean entityManagerFactoryBean(){ LocalContainerEntityManagerFactoryBean factoryBean = new LocalContainerEntityManagerFactoryBean(); factoryBean.setDataSource( this.restDataSource() ); factoryBean.setPackagesToScan( new String[ ] { "org.rest" } ); JpaVendorAdapter vendorAdapter = new HibernateJpaVendorAdapter(){ { // JPA properties ... } }; factoryBean.setJpaVendorAdapter( vendorAdapter ); factoryBean.setJpaProperties( this.additionlProperties() ); return factoryBean; } @Bean public DataSource restDataSource(){ DriverManagerDataSource dataSource = new DriverManagerDataSource(); dataSource.setDriverClassName( this.driverClassName ); dataSource.setUrl( this.url ); dataSource.setUsername( "restUser" ); dataSource.setPassword( "restmy5ql" ); return dataSource; } @Bean public PlatformTransactionManager transactionManager(){ JpaTransactionManager transactionManager = new JpaTransactionManager(); transactionManager.setEntityManagerFactory( this.entityManagerFactoryBean().getObject() ); return transactionManager; } @Bean public PersistenceExceptionTranslationPostProcessor exceptionTranslation(){ return new PersistenceExceptionTranslationPostProcessor(); } } Also, note that cglib must be on the classpath for Java @Configuration classes to work; to better understand the need for cglib as a dependency, see this article. 4. The Spring XML configuration The same Spring configuration with XML: There is a relatively small difference between the way Spring is configured in XML and the new Java based configuration – in XML, a reference to another bean can point to either the bean or a bean factory for that bean. In Java however, since the types are different, the compiler doesn’t allow it, and so the EntityManagerFactory is first retrieved from it’s bean factory and then passed to the transaction manager: txManager.setEntityManagerFactory( this.entityManagerFactoryBean().getObject() ); 5. Going full XML-less Usually, JPA defines a persistence unit through the META-INF/persistence.xml file. Starting with Spring 3.1, this XML file is no longer necessary – the LocalContainerEntityManagerFactoryBean now supports a ‘packagesToScan’ property where the packages to scan for @Entity classes can be specified. The persistence.xml file was the last piece of XML to be removed – now, JPA can be fully set up with no XML. 5.1. The JPA Properties JPA properties would usually be specified in the persistence.xml file; alternatively, the properties can be specified directly to the entity manager factory bean: factoryBean.setJpaProperties( this.additionlProperties() ); As a side-note, if Hibernate would be the persistence provider, then this would be the way to specify Hibernate specific properties. 5.2. The DAO Each DAO will be based on an parametrized, abstract DAO class class with support for the common generic operations: public abstract class AbstractJpaDAO< T extends Serializable > { private Class< T > clazz; @PersistenceContext EntityManager entityManager; public void setClazz( Class< T > clazzToSet ){ this.clazz = clazzToSet; } public T findOne( Long id ){ return this.entityManager.find( this.clazz, id ); } public List< T > findAll(){ return this.entityManager.createQuery( "from " + this.clazz.getName() ) .getResultList(); } public void save( T entity ){ this.entityManager.persist( entity ); } public void update( T entity ){ this.entityManager.merge( entity ); } public void delete( T entity ){ this.entityManager.remove( entity ); } public void deleteById( Long entityId ){ T entity = this.getById( entityId ); this.delete( entity ); } } A few aspects are interesting here – as discussed, the abstract DAO does not extend any Spring template (such as JpaTemplate). Instead, the JPA EntityManager is injected directly in the DAO, and will have the role of the main Persistence API Also, note that the entity Class is passed in the constructor to be used in the generic operations: @Repository public class FooDAO extends AbstractHibernateDAO< Foo > implements IFooDAO{ public FooDAO(){ setClazz(Foo.class ); } } 6. The Maven configuration In addition to the Maven configuration defined in a previous article, the following dependencies are addeed: spring-orm (which also has spring-tx as its dependency) and hibernate-entitymanager: org.springframework spring-orm 3.2.2.RELEASE org.hibernate hibernate-entitymanager 4.2.0.Final runtime mysql mysql-connector-java 5.1.24 runtime Note that the MySQL dependency is included as a reference – a driver is needed to configure the datasource, but any Hibernate supported database will do. 7. Conclusion This article covered the configuration and implementation of the persistence layer with JPA 2 and Spring 3.1, using both XML and Java based configuration. The reasons to stop relying on templates for the DAO layer was discussed, as well as getting rid of the last piece of XML usually associated with JPA – the persistence.xml. The final result is a lightweight, clean DAO implementation, with almost no compile-time reliance on Spring. You can check out the full implementation in the github project. OriginalThe Persistence Layer with Spring 3.1 and JPA from the Persistence with Spring series
January 7, 2012
by Eugen Paraschiv
· 63,054 Views · 1 Like
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Simplifying the Data Access Layer with Spring and Java Generics
1. Overview This is the second of a series of articles about Persistence with Spring. The previous article discussed setting up the persistence layer with Spring 3.1 and Hibernate, without using templates. This article will focus on simplifying the Data Access Layer by using a single, generified DAO, which will result in elegant data access, with no unnecessary clutter. Yes, in Java. The Persistence with Spring series: Part 1 – The Persistence Layer with Spring 3.1 and Hibernate Part 3 – The Persistence Layer with Spring 3.1 and JPA Part 4 – The Persistence Layer with Spring Data JPA Part 5 – Transaction configuration with JPA and Spring 3.1 2. The DAO mess Most production codebases have some kind of DAO layer. Usually the implementation ranges from a raw class with no inheritance to some kind of generified class, but one thing is consistent – there is always more then one. Most likely, there are as many DAOs as there are entities in the system. Also, depending on the level of generics involved, the actual implementations can vary from heavily duplicated code to almost empty, with the bulk of the logic grouped in an abstract class. 2.1. A Generic DAO Instead of having multiple implementations – one for each entity in the system – a single parametrized DAO can be used in such a way that it still takes full advantage of the type safety provided by generics. Two implementations of this concept are presented next, one for a Hibernate centric persistence layer and the other focusing on JPA. These implementation are by no means complete – only some data access methods are included, but they can be easily be made more thorough. 2.2. The Abstract Hibernate DAO public abstract class AbstractHibernateDAO< T extends Serializable > { private Class< T > clazz; @Autowired SessionFactory sessionFactory; public void setClazz( Class< T > clazzToSet ){ this.clazz = clazzToSet; } public T findOne( Long id ){ return (T) this.getCurrentSession().get( this.clazz, id ); } public List< T > findAll(){ return this.getCurrentSession() .createQuery( "from " + this.clazz.getName() ).list(); } public void save( T entity ){ this.getCurrentSession().persist( entity ); } public void update( T entity ){ this.getCurrentSession().merge( entity ); } public void delete( T entity ){ this.getCurrentSession().delete( entity ); } public void deleteById( Long entityId ){ T entity = this.getById( entityId ); this.delete( entity ); } protected Session getCurrentSession(){ return this.sessionFactory.getCurrentSession(); } } The DAO uses the Hibernate API directly, without relying on any Spring templates (such as HibernateTemplate). Using of templates, as well as management of the SessionFactory which is autowired in the DAO were covered in the previous post of the series. 2.3. The Abstract JPA DAO public abstract class AbstractJpaDAO< T extends Serializable > { private Class< T > clazz; @PersistenceContext EntityManager entityManager; public void setClazz( Class< T > clazzToSet ){ this.clazz = clazzToSet; } public T findOne( Long id ){ return this.entityManager.find( this.clazz, id ); } public List< T > findAll(){ return this.entityManager.createQuery( "from " + this.clazz.getName() ) .getResultList(); } public void save( T entity ){ this.entityManager.persist( entity ); } public void update( T entity ){ this.entityManager.merge( entity ); } public void delete( T entity ){ this.entityManager.remove( entity ); } public void deleteById( Long entityId ){ T entity = this.getById( entityId ); this.delete( entity ); } } Similar to the Hibernate DAO implementation, the Java Persistence API is used here directly, again not relying on the now deprecated Spring JpaTemplate. 2.4. The Generic DAO Now, the actual implementation of the generic DAO is as simple as it can be – it contains no logic. Its only purpose is to be injected by the Spring container in a service layer (or in whatever other type of client of the Data Access Layer): @Repository @Scope( BeanDefinition.SCOPE_PROTOTYPE ) public class GenericJpaDAO< T extends Serializable > extends AbstractJpaDAO< T > implements IGenericDAO< T >{ // } @Repository @Scope( BeanDefinition.SCOPE_PROTOTYPE ) public class GenericHibernateDAO< T extends Serializable > extends AbstractHibernateDAO< T > implements IGenericDAO< T >{ // } First, note that the generic implementation is itself parametrized – allowing the client to choose the correct parameter in a case by case basis. This will mean that the clients gets all the benefits of type safety without needing to create multiple artifacts for each entity. Second, notice the prototype scope of these generic DAO implementation. Using this scope means that the Spring container will create a new instance of the DAO each time it is requested (including on autowiring). That will allow a service to use multiple DAOs with different parameters for different entities, as needed. The reason this scope is so important is due to the way Spring initializes beans in the container. Leaving the generic DAO without a scope would mean using the default singleton scope, which would lead to a single instance of the DAO living in the container. That would obviously be majorly restrictive for any kind of more complex scenario. 3. The Service There is now a single DAO to be injected by Spring; also, the Class needs to be specified: @Service class FooService implements IFooService{ IGenericDAO< Foo > dao; @Autowired public void setDao( IGenericDAO< Foo > daoToSet ){ this.dao = daoToSet; this.dao.setClazz( Foo.class ); } // ... } Spring autowires the new DAO insteince using setter injection so that the implementation can be customized with the Class object. After this point, the DAO is fully parametrized and ready to be used by the service. 4. Conclusion This article discussed the simplification of the Data Access Layer by providing a single, reusable implementation of a generic DAO. This implementation was presented in both a Hibernate and a JPA based environment. The result is a streamlined persistence layer, with no unnecessary clutter. For a step by step introduction about setting up the Spring context using Java based configuration and the basic Maven pom for the project, see this article. The next article of the Persistence with Spring series will focus on setting up the DAL layer with Spring 3.1 and JPA. In the meantime, you can check out the full implementation in the github project. If you read this far, you should follow me on twitter here.
January 5, 2012
by Eugen Paraschiv
· 25,161 Views · 1 Like
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JAXB and Joda-Time: Dates and Times
Joda-Time provides an alternative to the Date and Calendar classes currently provided in Java SE. Since they are provided in a separate library JAXB does not provide a default mapping for these classes. We can supply the necessary mapping via XmlAdapters. In this post we will cover the following Joda-Time types: DateTime, DateMidnight, LocalDate, LocalTime, LocalDateTime. Java Model The following domain model will be used for this example: package blog.jodatime; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; import org.joda.time.DateMidnight; import org.joda.time.DateTime; import org.joda.time.LocalDate; import org.joda.time.LocalDateTime; import org.joda.time.LocalTime; @XmlRootElement @XmlType(propOrder={ "dateTime", "dateMidnight", "localDate", "localTime", "localDateTime"}) public class Root { private DateTime dateTime; private DateMidnight dateMidnight; private LocalDate localDate; private LocalTime localTime; private LocalDateTime localDateTime; public DateTime getDateTime() { return dateTime; } public void setDateTime(DateTime dateTime) { this.dateTime = dateTime; } public DateMidnight getDateMidnight() { return dateMidnight; } public void setDateMidnight(DateMidnight dateMidnight) { this.dateMidnight = dateMidnight; } public LocalDate getLocalDate() { return localDate; } public void setLocalDate(LocalDate localDate) { this.localDate = localDate; } public LocalTime getLocalTime() { return localTime; } public void setLocalTime(LocalTime localTime) { this.localTime = localTime; } public LocalDateTime getLocalDateTime() { return localDateTime; } public void setLocalDateTime(LocalDateTime localDateTime) { this.localDateTime = localDateTime; } } XmlAdapters Since Joda-Time and XML Schema both represent data and time information according to ISO 8601 the implementation of the XmlAdapters is quite trivial. DateTimeAdapter package blog.jodatime; import javax.xml.bind.annotation.adapters.XmlAdapter; import org.joda.time.DateTime; public class DateTimeAdapter extends XmlAdapter{ public DateTime unmarshal(String v) throws Exception { return new DateTime(v); } public String marshal(DateTime v) throws Exception { return v.toString(); } } DateMidnightAdapter package blog.jodatime; import javax.xml.bind.annotation.adapters.XmlAdapter; import org.joda.time.DateMidnight; public class DateMidnightAdapter extends XmlAdapter { public DateMidnight unmarshal(String v) throws Exception { return new DateMidnight(v); } public String marshal(DateMidnight v) throws Exception { return v.toString(); } } LocalDateAdapter package blog.jodatime; import javax.xml.bind.annotation.adapters.XmlAdapter; import org.joda.time.LocalDate; public class LocalDateAdapter extends XmlAdapter{ public LocalDate unmarshal(String v) throws Exception { return new LocalDate(v); } public String marshal(LocalDate v) throws Exception { return v.toString(); } } LocalTimeAdapter package blog.jodatime; import javax.xml.bind.annotation.adapters.XmlAdapter; import org.joda.time.LocalTime; public class LocalTimeAdapter extends XmlAdapter { public LocalTime unmarshal(String v) throws Exception { return new LocalTime(v); } public String marshal(LocalTime v) throws Exception { return v.toString(); } } LocalDateTimeAdapter package blog.jodatime; import javax.xml.bind.annotation.adapters.XmlAdapter; import org.joda.time.LocalDateTime; public class LocalDateTimeAdapter extends XmlAdapter{ public LocalDateTime unmarshal(String v) throws Exception { return new LocalDateTime(v); } public String marshal(LocalDateTime v) throws Exception { return v.toString(); } } Registering the XmlAdapters We will use the @XmlJavaTypeAdapters annotation to register the Joda-Time types at the package level. This means that whenever these types are found on a field/property on a class within this package the XmlAdapter will automatically be applied. @XmlJavaTypeAdapters({ @XmlJavaTypeAdapter(type=DateTime.class, value=DateTimeAdapter.class), @XmlJavaTypeAdapter(type=DateMidnight.class, value=DateMidnightAdapter.class), @XmlJavaTypeAdapter(type=LocalDate.class, value=LocalDateAdapter.class), @XmlJavaTypeAdapter(type=LocalTime.class, value=LocalTimeAdapter.class), @XmlJavaTypeAdapter(type=LocalDateTime.class, value=LocalDateTimeAdapter.class) }) package blog.jodatime; import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter; import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapters; import org.joda.time.DateMidnight; import org.joda.time.DateTime; import org.joda.time.LocalDate; import org.joda.time.LocalDateTime; import org.joda.time.LocalTime; Demo To run the following demo you will need the Joda-Time jar on your classpath. It can be obtained here: http://sourceforge.net/projects/joda-time/files/joda-time/ package blog.jodatime; import javax.xml.bind.JAXBContext; import javax.xml.bind.Marshaller; import org.joda.time.DateMidnight; import org.joda.time.DateTime; import org.joda.time.LocalDate; import org.joda.time.LocalDateTime; import org.joda.time.LocalTime; public class Demo { public static void main(String[] args) throws Exception { Root root = new Root(); root.setDateTime(new DateTime(2011, 5, 30, 11, 2, 30, 0)); root.setDateMidnight(new DateMidnight(2011, 5, 30)); root.setLocalDate(new LocalDate(2011, 5, 30)); root.setLocalTime(new LocalTime(11, 2, 30)); root.setLocalDateTime(new LocalDateTime(2011, 5, 30, 11, 2, 30)); JAXBContext jc = JAXBContext.newInstance(Root.class); Marshaller marshaller = jc.createMarshaller(); marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true); marshaller.marshal(root, System.out); } } Output The following is the output from our demo code: 2011-05-30T11:02:30.000-04:00 2011-05-30T00:00:00.000-04:00 2011-05-30 11:02:30.000 2011-05-30T11:02:30.000 From http://blog.bdoughan.com/2011/05/jaxb-and-joda-time-dates-and-times.html
December 29, 2011
by Blaise Doughan
· 15,812 Views
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The “4+1” View Model of Software Architecture
In November 1995, while working as Lead software architect at Hughes Aircraft Of Canada Philippe Kruchten published a paper entitled: "Architectural Blueprints—The “4+1” View Model of Software Architecture". The intent was to come up with a mechanism to separate the different aspects of a software system into different views of the system. Why? Because different stakeholders always have different interest in a software system. Some aspects of a system are relevant to the Developers; others are relevant to System administrators. The Developers want to know about things like classes; System administrators want to know about deployment, hardware and network configurations and don't care about classes. Similar points can be made for Testers, Project Managers and Customers. Kruchten thought it made sense to decompose architecture into distinct views so stakeholders could get what they wanted. In total there were 5 views in his approach but he decided to call it 4 + 1. We'll discuss why it's called 4 + 1 later! But first, let's have a look at each of the different views. The logical view This contains information about the various parts of the system. In UML the logical view is modelled using Class, Object, State machine and Interaction diagrams (e.g Sequence diagrams). It's relevance is really to developers. The process view This describes the concurrent processes within the system. It encompasses some non-functional requirements such as performance and availability. In UML, Activity diagrams - which can be used to model concurrent behaviour - are used to model the process view. The development view The development view focusses on software modules and subsystems. In UML, Package and Component diagrams are used to model the development view. The physical view The physical view describes the physical deployment of the system. For example, how many nodes are used and what is deployed on what node. Thus, the physical view concerns some non-functional requirements such as scalability and availability. In UML, Deployment diagrams are used to model the physical view. The use case view This view describes the functionality of the system from the perspective from outside world. It contains diagrams describing what the system is supposed to do from a black box perspective. This view typically contains Use Case diagrams. All other views use this view to guide them. Why is it called the 4 + 1 instead of just 5? Well this is because of the special significance the use case view has. When all other views are finished, it's effectively redundant. However, all other views would not be possible without it. It details the high levels requirements of the system. The other views detail how those requirements are realised. 4 + 1 came before UML It's important to remember the 4 + 1 approach was put forward two years before the first the introduction of UML which did not manifest in its first guise until 1997. UML is how most enterprise architectures are modelled and the 4 + 1 approach still plays a relevance to UML today. UML 2.0 has 13 different types of diagrams - each diagram type can be categorised into one of the 4 + 1 views. UML is 4 + 1 friendly! So is it important? The 4 + 1 approach isn't just about satisfying different stakeholders. It makes modelling easier to do because it makes it easier to organise. A typical project will contain numerous diagrams of the various types. For example, a project may contain a few hundred sequence diagrams and several class diagrams. Grouping diagrams of similar types and purpose means there is an emphasis in separating concerns. Sure isn't it just the same with Java? Grouping Java classes of similar purpose and related responsibilities into packages means organisation is better. Similarly, grouping different components into different jar files means organisation is better. Modelling tools will usually support the 4 + 1 approach and this means projects will have templates for how to split the various types of diagrams. In a company when projects follow industry standard templates again it means things are better organised. The 4 + 1 approach also provides a way for architects to be able to prioritise modelling concerns. It is rare that a project will have enough time to model every single diagram possible for an architecture. Architects can prioritise different views. For example, for a business domain intensive project it would make sense to prioritise the logical view. In a project with high concurrency and complex timing it would make sense to ensure the process view gets ample time. Similarly, the 4 + 1 approach makes it possible for stakeholders to get the parts of the model that are relevant to them. References: Architectural Blueprints—The “4+1” View Model of Software Architecture Paper http://www.cs.ubc.ca/~gregor/teaching/papers/4+1view-architecture.pdf Learning UML 2.0 by Russ Miles & Kim Hamilton. O'Reilly From http://dublintech.blogspot.com/2011/05/41-view-model-of-software-architecture.html
December 28, 2011
by Alex Staveley
· 53,932 Views
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How to deploy a neo4j instance in Amazon EC2 in 10 minutes
Neo4j is a high-performance, NOSQL graph database with all the features of a mature and robust database. In this post I will explain how to deploy a neo4j instance in Amazon EC2 web service. For this tutorial to take you no more than 10 minutes you should be able to execute properly some bash commands like mv, tar, ssh and scp (secure copy). I also assume that you have an account in Amazon Web Services and you are familiar to the process of launching instances. If not, I strongly recommend you to follow this starting guide and complete it till you manage to connect to your instance with ssh. Start downloading the latest stable version of neo4j. Which you can find here. The “Community Edition” fits well for development purposes. Do not forget to select the Unix version of the server. This will download a tar.gz file which you will copy to your EC2 instance later. While you download the neo4j server open the AWS Management Console and launch a Basic 32-bit Amazon Linux AMI. If you want to launch an Ubuntu AMI please notice that it doesn’t ship with Java, which is required for running neo4j. If you are not familiar with key pairs, pem files or security groups I insist you to follow the EC2 starting guide I mentioned above. You can either create a new security group or use the default, but you will need to configure a new security rule for the neo4j server port. After launching the instance, create a TCP rule on port 7474 with source 0.0.0.0/0. Here you are opening port 7474 for anyone. If you are planning to use the neo4j REST API and remotely call it from another server, for example a Rails application hosted in Heroku, for security reasons, you may want to change the source field to the address of your Heroku server. Do not forget to open port 22 (SSH), this is typically the first rule normal people create after launching an instance. You are almost done! You should now install neo4j in your instance. Open a terminal in your localhost and navigate to the path where you downloaded neo4j. Copy the file to your Amazon instance by using the scp command: scp -i your_pem_file.pem neo4j-community-1.6.M01-unix.tar.gz ec2-user@YOUR_PUBLIC_INSTANCE_DNS:/home/ec2-user Please notice that you will need to change the path to your pem file, typically placed in ~/.ssh, the filename of the neo4j server you just downloaded and the plublic DNS of your instance. Now connect to your instance with SSH: ssh -i your_pem_file.pem ec2-user@YOUR_PUBLIC_INSTANCE_DNS Untar the neo4j server: tar xvfz neo4j-community-1.6.M01-unix.tar.gz.tar.gz Move it to /usr/local and rename the folder to neo4j: sudo mv neo4j-community-1.6.M01 /usr/local/neo4j Almost done!!! You should now open neo4j-server.properties under the conf directory and add the following line: org.neo4j.server.webserver.address=0.0.0.0 This lines allows anyone to connect remotely to your neo4j database server. Now run the start script. From the neo4j server folder. sudo ./bin/neo4j start Finally, open a browser and access the webadmin interface of your neo4j database by typing http://YOUR_PUBLIC_INSTANCE_DNS:7474. You should see the Neo4j Monitoring and Management Tool, pretty cool! If not, ask me You can now try using the REST API and the curl bash command to insert nodes and relationships. I hope this post helped you, good luck! Follow me on Twitter @negarnil Source: http://www.cloudtmp.com/java/how-to-deploy-a-neo4j-instance-in-amazon-ec2-in-10-minutes/
December 27, 2011
by Nicolas Garnil
· 27,450 Views · 1 Like
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How to order by multiple columns using Lambas and LINQ in C#
Today, I was required to order a list of records based on a Name and then ID. A simple one, but I did spend some time on how to do it with Lambda Expression in C#. C# provides the OrderBy, OrderByDescending, ThenBy, ThenByDescending. You can use them in your lambda expression to order the records as per your requirement. Assuming your list is “Phones” and contains the following data public class Phone { public int ID { get; set; } public string Name { get; set; } } public class Phones : List { public Phones() { Add(new Phone { ID = 1, Name = "Windows Phone 7" }); Add(new Phone { ID = 5, Name = "iPhone" }); Add(new Phone { ID = 2, Name = "Windows Phone 7" }); Add(new Phone { ID = 3, Name = "Windows Mobile 6.1" }); Add(new Phone { ID = 6, Name = "Android" }); Add(new Phone { ID = 10, Name = "BlackBerry" }); } } If you were to use LINQ Query , the query will look like the one below dataGridView1.DataSource = (from m in new Phones() orderby m.Name, m.ID select m).ToList(); Simple isn’t it ? It very simple using Lamba expression too. Your Lambda’s expression for the above LINQ query will look like the one below dataGridView1.DataSource = new Phones().OrderByDescending(a => a.Name).ThenByDescending(a => a.ID).ToList();
December 24, 2011
by Senthil Kumar
· 136,981 Views
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Enabling JMX in Hibernate, Ehcache, Quartz, DBPC and Spring
A collection of short how-to's for enabling JMX in several popular Java technologies. Continuing our journey with JMX (see: ...JMX for human beings) we will learn how to enable JMX support (typically statistics and monitoring capabilities) in some popular frameworks. Most of this information can be found on project's home pages, but I decided to collect it with few the addition of some useful tips. Hibernate (with Spring support) Exposing Hibernate statistics with JMX is pretty simple, however some nasty workarounds are requires when JPA API is used to obtain underlying SessionFactory class JmxLocalContainerEntityManagerFactoryBean() extends LocalContainerEntityManagerFactoryBean { override def createNativeEntityManagerFactory() = { val managerFactory = super.createNativeEntityManagerFactory() registerStatisticsMBean(managerFactory) managerFactory } def registerStatisticsMBean(managerFactory: EntityManagerFactory) { managerFactory match { case impl: EntityManagerFactoryImpl => val mBean = new StatisticsService(); mBean.setStatisticsEnabled(true) mBean.setSessionFactory(impl.getSessionFactory); val name = new ObjectName("org.hibernate:type=Statistics,application=spring-pitfalls") ManagementFactory.getPlatformMBeanServer.registerMBean(mBean, name); case _ => } } } Note that I have created a subclass of Springs built-in LocalContainerEntityManagerFactoryBean. By overriding createNativeEntityManagerFactory() method I can access EntityManagerFactory and by trying to downcast it to org.hibernate.ejb.EntityManagerFactoryImpl we were able to register Hibernate Mbean. One more thing has left. Obviously we have to use our custom subclass instead of org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean. Also, in order to collect the actual statistics instead of just seeing zeroes all the way down we must set the hibernate.generate_statistics flag. @Bean def entityManagerFactoryBean() = { val entityManagerFactoryBean = new JmxLocalContainerEntityManagerFactoryBean() entityManagerFactoryBean.setDataSource(dataSource()) entityManagerFactoryBean.setJpaVendorAdapter(jpaVendorAdapter()) entityManagerFactoryBean.setPackagesToScan("com.blogspot.nurkiewicz") entityManagerFactoryBean.setJpaPropertyMap( Map( "hibernate.hbm2ddl.auto" -> "create", "hibernate.format_sql" -> "true", "hibernate.ejb.naming_strategy" -> classOf[ImprovedNamingStrategy].getName, "hibernate.generate_statistics" -> true.toString ).asJava ) entityManagerFactoryBean } Here is a sample of what can we expect to see in JvisualVM (don't forget to install all plugins!): In addition we get a nice Hibernate logging: HQL: select generatedAlias0 from Book as generatedAlias0, time: 10ms, rows: 20 EhCache Monitoring caches is very important, especially in application where you expect values to generally be present there. I tend to query the database as often as needed to avoid unnecessary method arguments or local caching. Everything to make code as simple as possible. However this approach only works when caching on the database layer works correctly. Similar to Hibernate, enabling JMX monitoring in EhCache is a two-step process. First you need to expose provided MBean in MBeanServer: @Bean(initMethod = "init", destroyMethod = "dispose") def managementService = new ManagementService(ehCacheManager(), platformMBeanServer(), true, true, true, true, true) @Bean def platformMBeanServer() = ManagementFactory.getPlatformMBeanServer def ehCacheManager() = ehCacheManagerFactoryBean.getObject @Bean def ehCacheManagerFactoryBean = { val ehCacheManagerFactoryBean = new EhCacheManagerFactoryBean ehCacheManagerFactoryBean.setShared(true) ehCacheManagerFactoryBean.setCacheManagerName("spring-pitfalls") ehCacheManagerFactoryBean } Note that I explicitly set CacheManager name. This is not required but this name is used as part of the Mbean name and a default one contains hashCode value, which is not very pleasant. The final touch is to enable statistics on a cache basis: Now we can happily monitor various caching characteristics of every cache separately: As we can see the percentage of cache misses increases. Never a good thing. If we don't enable cache statistics, enabling JMX is still a good idea since we get a lot of management operations for free, including flushing and clearing caches (useful during debugging and testing). Quartz scheduler In my humble opinion Quartz scheduler is very underestimated library, but I will write an article about it on its own. This time we will only learn how to monitor it via JMX. Fortunately it's as simple as adding: org.quartz.scheduler.jmx.export=true To quartz.properties file. The JMX support in Quartz could have been slightly broader, but still one can query e.g. which jobs are currently running. By the way the new major version of Quartz (2.x) brings very nice DSL-like support for scheduling: val job = newJob(classOf[MyJob]) val trigger = newTrigger(). withSchedule( repeatSecondlyForever() ). startAt( futureDate(30, SECOND) ) scheduler.scheduleJob(job.build(), trigger.build()) Apache Commons DBCP Apache Commons DBCP is the most reasonable JDBC pooling library I came across. There is also c3p0, but it doesn't seem like it's actively developed any more. Tomcat JDBC Connection Pool looked promising, but since it's bundled in Tomcat, your JDBC drivers can no longer be packaged in WAR. The only problem with DBCP is that it does not support JMX. At all (see this two and a half year old issue). Fortunately this can be easily worked around. Besides we will learn how to use Spring built-in JMX support. Looks like the standard BasicDataSource has all what we need, all we have to do is to expose existing metrics via JMX. With Spring it is dead-simple – just subclass BasicDataSource and add @ManagedAttribute annotation over desired attributes: @ManagedResource class ManagedBasicDataSource extends BasicDataSource { @ManagedAttribute override def getNumActive = super.getNumActive @ManagedAttribute override def getNumIdle = super.getNumIdle @ManagedAttribute def getNumOpen = getNumActive + getNumIdle @ManagedAttribute override def getMaxActive: Int= super.getMaxActive @ManagedAttribute override def setMaxActive(maxActive: Int) { super.setMaxActive(maxActive) } @ManagedAttribute override def getMaxIdle = super.getMaxIdle @ManagedAttribute override def setMaxIdle(maxIdle: Int) { super.setMaxIdle(maxIdle) } @ManagedAttribute override def getMinIdle = super.getMinIdle @ManagedAttribute override def setMinIdle(minIdle: Int) { super.setMinIdle(minIdle) } @ManagedAttribute override def getMaxWait = super.getMaxWait @ManagedAttribute override def setMaxWait(maxWait: Long) { super.setMaxWait(maxWait) } @ManagedAttribute override def getUrl = super.getUrl @ManagedAttribute override def getUsername = super.getUsername } Here are few data source metrics going crazy during load-test: JMX support in the Spring framework itself is pretty simple. As you have seen above exposing arbitrary attribute or operation is just a matter of adding an annotation. You only have to remember about enabling JMX support using either XML or Java (also see: SPR-8943 : Annotation equivalent to with @Configuration): or: @Bean def annotationMBeanExporter() = new AnnotationMBeanExporter() This article wasn't particularly exciting. However, the knowledge of JMX metrics will enable us to write simple yet fancy dashboards in no time. Stay tuned! From http://nurkiewicz.blogspot.com/2011/12/enabling-jmx-in-hibernate-ehcache-qurtz.html
December 22, 2011
by Tomasz Nurkiewicz
· 12,747 Views
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How to create offline HTML5 web apps in 5 easy steps
Among all cool new features introduced by HTML5, the possibility of caching web pages for offline use is definitely one of my favorites. Today, I’m glad to show you how you can create a page that will be available for offline browsing. Getting started View Demo Download files 1 – Add HTML5 doctype The first thing to do is create a valid HTML5 document. The HTML5 doctype is easier to remember than ones used for xhtml: ... Create a file named index.html, or get the example files from my CSS3 media queries article to use as a basis for this tutorial. In case you need it, the full HTML5 specs are available on the W3C website. 2 – Add .htaccess support The file we’re going to create to cache our web page is called a manifest file. Before creating it, we first have to add a directive to the .htaccess file (assuming your server is Apache). Open the .htaccess file, which is located on your website root, and add the following code: AddType text/cache-manifest .manifest This directive makes sure that every .manifest file is served as text/cache-manifest. If the file isn’t, then the whole manifest will have no effect and the page will not be available offline. 3 – Create the manifest file Now, things are going to be more interesting as we create a manifest file. Create a new file and save it as offline.manifest. Then, paste the following code in it. I’ll explain it later. CACHE MANIFEST #This is a comment CACHE index.html style.css image.jpg image-med.jpg image-small.jpg notre-dame.jpg Right now, you have a perfectly working manifest file. The way it works is very simple: After the CACHE declaration, you have to list each files you want to make available offline. That’s enough for caching a simple web page like the one from my example, but HTML5 caching has other interesting possibilities. For example, consider the following manifest file: CACHE MANIFEST #This is a comment CACHE index.html style.css NETWORK: search.php login.php FALLBACK: /api offline.html Like in the example manifest file, we have a CACHE declaration that caches index.html and style.css. But we also have the NETWORK declaration, which is used to specify files that shouldn’t be cached, such as a login page. The last declaration is FALLBACK. This declaration allows you to redirect the user to a particular file (in this example, offline.html) if a resource (/api) isn’t available offline. 4 – Link your manifest file to the html document Now, both your manifest file and your main html document are ready. The only thing you still have to do is to link the manifest file to the html document. Doing this is easy: simply add the manifest attribute to the html element as shown below: 5 – Test it Once done, you’re ready to go. If you visit your index.html file with Firefox 3.5+, you should see a banner like this one: Other browser I’ve tested (Chrome, Safari, Android and iPhone) do not warn about the file caching, and the file is automatically cached. Below you’ll find the browser compatibility of this technique: As usual Internet Explorer does not support it. IE: No support Firefox: 3.5+ Safari: 4.0+ Chrome: 5.0+ Opera: 10.6+ iPhone: 2.1+ Android: 2.0+ Source: http://www.catswhocode.com/blog/how-to-create-offline-html5-web-apps-in-5-easy-steps
December 22, 2011
by Jean-Baptiste Jung
· 24,176 Views
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A Gentle Introduction to Making HTML5 Canvas Interactive
this is an big overhaul of one of my tutorials on making and moving shapes on an html5 canvas. this new tutorial is vastly cleaner than my old one, but if you still want to see that one or are looking for the concept of a “ghost context” you can find that one here. this tutorial will show you how to create a simple data structure for shapes on an html5 canvas and how to have them be selectable. the finished canvas will look like this: this article’s code is written primarily to be easy to understand. we’ll be going over a few things that are essential to interactive apps such as games (drawing loop, hit testing), and in later tutorials i will probably turn this example into a small game of some kind. i will try to accommodate javascript beginners but this introduction does expect at least a rudimentary understanding of js. not every piece of code is explained in the text, but almost every piece of code is thoroughly commented! the html5 canvas a canvas is made by using the tag in html: this text is displayed if your browser does not support html5 canvas. a canvas isn’t smart: it’s just a place for drawing pixels. if you ask it to draw something it will execute the drawing command and then immediately forget everything about what it has just drawn. this is sometimes referred to as an immediate drawing surface, as contrasted with svg as a retained drawing surface, since svg keeps a reference to everything drawn. because we have no such references, we have to keep track ourselves of all the things we want to draw (and re-draw) each frame. canvas also has no built-in way of dealing with animation. if you want to make something you’ve drawn move, you have to clear the entire canvas and redraw all of the objects with one or more of them moved. and you have to do it often, of course, if you want a semblance of animation or motion. so we’ll need to add: code for keeping track of objects code for keeping track of canvas state code for mouse events code for drawing the objects as they are made and move around keeping track of what we draw to keep things simple for this example we will start with a shape class to represent rectangular objects. javascript doesn’t technically have classes, but that isn’t a problem because javascript programmers are very good at playing pretend. functionally (well, for our example) we are going to have a shape class and create shape instances with it. what we are really doing is defining a function named shape and adding functions to shape’s prototype. you can make new instances of the function shape and all instances will share the functions defined on shape’s prototype. if you’ve never encountered prototypes in javascript before or if the above sounds confusing to you, i highly recommend reading crockford’s javascript: the good parts . the book is an intermediate overview of javascript that gives a good understanding of why programmers choose to create objects in different ways, why certain conventions are frowned upon, and just what makes javascript so different. here’s our shape constructor and one of the two prototype methods, which are comparable to a class instance methods: // constructor for shape objects to hold data for all drawn objects. // for now they will just be defined as rectangles. function shape(x, y, w, h, fill) { // this is a very simple and unsafe constructor. // all we're doing is checking if the values exist. // "x || 0" just means "if there is a value for x, use that. otherwise use 0." this.x = x || 0; this.y = y || 0; this.w = w || 1; this.h = h || 1; this.fill = fill || '#aaaaaa'; } // draws this shape to a given context shape.prototype.draw = function(ctx) { ctx.fillstyle = this.fill; ctx.fillrect(this.x, this.y, this.w, this.h); } keeping track of canvas state we’re going to have a second class/function called canvasstate. we’re only going to make one instance of this class and it will hold all of the state in this tutorial that is not associated with shapes themselves. canvasstate is going to foremost need a reference to the canvas and a few other field for convenience. we’re also going to compute and save the border and padding (if there is any) so that we can get accurate mouse coordinates. in the canvasstate constructor we will also have a collection of state relating to the objects on the canvas and the current status of dragging. we’ll make an array of shapes, a flag “dragging” that will be true while we are dragging, a field to keep track of which object is selected and a “valid” flag that will be set to false will cause the canvas to clear everything and redraw. is going to need an array of shapes to keep track of whats been drawn so far. i’m going to add a bunch of variables for keeping track of the drawing and mouse state. i already added boxes[] to keep track of each object, but we’ll also need a var for the canvas, the canvas’ 2d context (where wall drawing is done), whether the mouse is dragging, width/height of the canvas, and so on. we’ll also want to make a second canvas, for selection purposes, but i’ll talk about that later. function canvasstate(canvas) { // ... // i removed some setup code to save space // see the full source at the end // **** keep track of state! **** this.valid = false; // when set to true, the canvas will redraw everything this.shapes = []; // the collection of things to be drawn this.dragging = false; // keep track of when we are dragging // the current selected object. // in the future we could turn this into an array for multiple selection this.selection = null; this.dragoffx = 0; // see mousedown and mousemove events for explanation this.dragoffy = 0; mouse events we’ll add events for mousedown, mouseup, and mousemove that will control when an object starts and stops dragging. we’ll also disable the selectstart event, which stops double-clicking on canvas from accidentally selecting text on the page. finally we’ll add a double-click event that will create a new shape and add it to the canvasstate’s list of shapes. the mousedown event begins by calling getmouse on our canvasstate to return the x and y position of the mouse. we then iterate through the list of shapes to see if any of them contain the mouse position. we go through them backwards because they are drawn forwards, and we want to select the one that appears topmost, so we must find the potential shape that was drawn last. if we find the shape we save the offset, save that shape as our selection, set dragging to true and set the valid flag to false. already we’ve used most of our state! finally if we didn’t find any objects we need to see if there was a selection saved from last time. if there is we should clear it. since we clicked on nothing, we obviously didn’t click on the already-selected object! clearing the selection means we will have to clear the canvas and redraw everything without the selection ring, so we set the valid flag to false. // ... // (we are still in the canvasstate constructor) // this is an example of a closure! // right here "this" means the canvasstate. but we are making events on the canvas itself, // and when the events are fired on the canvas the variable "this" is going to mean the canvas! // since we still want to use this particular canvasstate in the events we have to save a reference to it. // this is our reference! var mystate = this; //fixes a problem where double clicking causes text to get selected on the canvas canvas.addeventlistener('selectstart', function(e) { e.preventdefault(); return false; }, false); // up, down, and move are for dragging canvas.addeventlistener('mousedown', function(e) { var mouse = mystate.getmouse(e); var mx = mouse.x; var my = mouse.y; var shapes = mystate.shapes; var l = shapes.length; for (var i = l-1; i >= 0; i--) { if (shapes[i].contains(mx, my)) { var mysel = shapes[i]; // keep track of where in the object we clicked // so we can move it smoothly (see mousemove) mystate.dragoffx = mx - mysel.x; mystate.dragoffy = my - mysel.y; mystate.dragging = true; mystate.selection = mysel; mystate.valid = false; return; } } // havent returned means we have failed to select anything. // if there was an object selected, we deselect it if (mystate.selection) { mystate.selection = null; mystate.valid = false; // need to clear the old selection border } }, true); the mousemove event checks to see if we have set the dragging flag to true. if we have it gets the current mouse positon and moves the selected object to that position, remembering the offset of where we were grabbing it. if the dragging flag is false the mousemove event does nothing. canvas.addeventlistener('mousemove', function(e) { if (mystate.dragging){ var mouse = mystate.getmouse(e); // we don't want to drag the object by its top-left corner, // we want to drag from where we clicked. // thats why we saved the offset and use it here mystate.selection.x = mouse.x - mystate.dragoffx; mystate.selection.y = mouse.y - mystate.dragoffy; mystate.valid = false; // something's dragging so we must redraw } }, true); the mouseup event is simple, all it has to do is update the canvasstate so that we are no longer dragging! so once you lift the mouse, the mousemove event is back to doing nothing. canvas.addeventlistener('mouseup', function(e) { mystate.dragging = false; }, true); the double click event we’ll use to add more shapes to our canvas. it calls addshape on the canvasstate with a new instance of shape. all addshape does is add the argument to the list of shapes in the canvasstate. // double click for making new shapes canvas.addeventlistener('dblclick', function(e) { var mouse = mystate.getmouse(e); mystate.addshape(new shape(mouse.x - 10, mouse.y - 10, 20, 20, 'rgba(0,255,0,.6)')); }, true); there are a few options i implemented, what the selection ring looks like and how often we redraw. setinterval simply calls our canvasstate’s draw method. our interval of 30 means that we call the draw method every 30 milliseconds. // **** options! **** this.selectioncolor = '#cc0000'; this.selectionwidth = 2; this.interval = 30; setinterval(function() { mystate.draw(); }, mystate.interval); } drawing now we’re set up to draw every 30 milliseconds, which will allow us to continuously update the canvas so it appears like the shapes we drag are smoothly moving around. however, drawing doesn’t just mean drawing the shapes over and over; we also have to clear the canvas on every draw. if we don’t clear it, dragging will look like the shape is making a solid line because none of the old shape-positions will go away. because of this, we clear the entire canvas before each draw frame. this can get expensive, and we only want to draw if something has actually changed within our framework, which is why we have the “valid” flag in our canvasstate. after everything is drawn the draw method will set the valid flag to true. then, ocne we do something like adding a new shape or trying to drag a shape, the state will get invalidated and draw() will clear, redraw all objects, and set the valid flag again. // while draw is called as often as the interval variable demands, // it only ever does something if the canvas gets invalidated by our code canvasstate.prototype.draw = function() { // if our state is invalid, redraw and validate! if (!this.valid) { var ctx = this.ctx; var shapes = this.shapes; this.clear(); // ** add stuff you want drawn in the background all the time here ** // draw all shapes var l = shapes.length; for (var i = 0; i < l; i++) { var shape = shapes[i]; // we can skip the drawing of elements that have moved off the screen: if (shape.x > this.width || shape.y > this.height || shape.x + shape.w < 0 || shape.y + shape.h < 0) return; shapes[i].draw(ctx); } // draw selection // right now this is just a stroke along the edge of the selected shape if (this.selection != null) { ctx.strokestyle = this.selectioncolor; ctx.linewidth = this.selectionwidth; var mysel = this.selection; ctx.strokerect(mysel.x,mysel.y,mysel.w,mysel.h); } // ** add stuff you want drawn on top all the time here ** this.valid = true; } } we go through all of shapes[] and draw each one in order. this will give the nice appearance of later shapes looking as if they are on top of earlier shapes. after all the shapes are drawn, a selection handle (if there is a selection) gets drawn around the shape that this.selection references. if you wanted a background (like a city) or a foreground (like clouds), one way to add them is to put them before or after the main two drawing bits. there are often better ways though, like using multiple canvases or a css background-image, but we won’t go over that here. getting mouse coordinates on canvas getting good mouse coordinates is a little tricky on canvas. you could use offsetx/y and layerx/y, but layerx/y is deprecated in webkit (chrome and safari) and firefox does not have offsetx/y. the most bulletproof way to get the correct mouse position is shown below. you have to walk up the tree adding the offsets together. then you must add any padding or border to the offset. finally, to fix coordinate problems when you have fixed-position elements on the page (like the wordpress admin bar or a stumbleupon bar) you must add the ’s offsettop and offsetleft. then you simply subtract that offset from the e.pagex/y values and you’ll get perfect coordinates in almost every possible situation. // creates an object with x and y defined, // set to the mouse position relative to the state's canvas // if you wanna be super-correct this can be tricky, // we have to worry about padding and borders canvasstate.prototype.getmouse = function(e) { var element = this.canvas, offsetx = 0, offsety = 0, mx, my; // compute the total offset if (element.offsetparent !== undefined) { do { offsetx += element.offsetleft; offsety += element.offsettop; } while ((element = element.offsetparent)); } // add padding and border style widths to offset // also add the offsets in case there's a position:fixed bar offsetx += this.stylepaddingleft + this.styleborderleft + this.htmlleft; offsety += this.stylepaddingtop + this.stylebordertop + this.htmltop; mx = e.pagex - offsetx; my = e.pagey - offsety; // we return a simple javascript object (a hash) with x and y defined return {x: mx, y: my}; } there are a few little methods i added that are not shown, such as shape’s method to see if a point is inside its bounds. you can see and download the full demo source here . now that we have a basic structure down, it is easy to write code that handles more complex shapes, like paths or images or video. rotation and scaling these things takes a bit more work, but is quite doable with the canvas and our selection method is already set up to deal with them. if you would like to see this code enhanced in future posts (or have any fixes), let me know. source: http://simonsarris.com/blog/510-making-html5-canvas-useful
December 21, 2011
by Simon Sarris
· 11,367 Views · 1 Like
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